| Occurrences: |
view occurrences
| id |
486ba45b-c9ee-4d4c-97ea-59bbe57a898e
|
| scientificName |
Magallana bilineata
|
| AphiaID |
836036
|
| eventDate |
2024-02-28
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| eventID |
SUVA2_20240228_WA
|
| materialSampleID |
USP-24-01-208
|
| target_gene |
COI
|
| DNA_sequence |
GCTATCAACTTATTCTTATCATGGCGTTTGTATAGACCTTGCTATTTTAAGGCTGCATTTGGCTGGTATTAGCTCTATTTTTAGATCAATTAACTTTATAGTGACCATCAGAAATATGCGGTCTGTTGGCGGGCATTTACTAGCATTATTCCCCTGGTCTATTAAGGTCACATCATTTTTGCTTTTAACCACTCTTCCAGTGTTGGCAGGGGGCCTTACTATACTCCTTACTGATCGTCATTTTAATACGTCTTTTTTTGATCCTGTGGGCGGAGGTGATCCTGTATTGTTTCAGCATTTATTC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Crassostrea madrasensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819168",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "KM373585",
"identity": 1,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "HQ661022",
"identity": 0.993,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "HQ661023",
"identity": 0.993,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "KM373586",
"identity": 0.993,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "KM373588",
"identity": 0.993,
"query_cover": 0.9967
}
]
}
|
| organismQuantity |
10.0
|
| id |
7c360f65-c501-4320-ae07-6419830065b1
|
| scientificName |
Magallana bilineata
|
| AphiaID |
836036
|
| eventDate |
2024-02-28
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| eventID |
SUVA2_20240228_WB
|
| materialSampleID |
USP-24-01-209
|
| target_gene |
COI
|
| DNA_sequence |
GCTATCAACTTATTCTTATCATGGCGTTTGTATAGACCTTGCTATTTTAAGGCTGCATTTGGCTGGTATTAGCTCTATTTTTAGATCAATTAACTTTATAGTGACCATCAGAAATATGCGGTCTGTTGGCGGGCATTTACTAGCATTATTCCCCTGGTCTATTAAGGTCACATCATTTTTGCTTTTAACCACTCTTCCAGTGTTGGCAGGGGGCCTTACTATACTCCTTACTGATCGTCATTTTAATACGTCTTTTTTTGATCCTGTGGGCGGAGGTGATCCTGTATTGTTTCAGCATTTATTC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Crassostrea madrasensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819168",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "KM373585",
"identity": 1,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "HQ661022",
"identity": 0.993,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "HQ661023",
"identity": 0.993,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "KM373586",
"identity": 0.993,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "KM373588",
"identity": 0.993,
"query_cover": 0.9967
}
]
}
|
| organismQuantity |
1.0
|
|