Occurrences: |
view occurrences
id |
ae3f872e-47f7-485f-9de8-cf8b34b3e99d
|
scientificName |
Pyura
|
eventDate |
2023-11-28
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-73
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
identificationRemarks |
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organismQuantity |
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id |
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scientificName |
Pyura
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eventDate |
2023-11-28
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-78
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
identificationRemarks |
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id |
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scientificName |
Pyura
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eventDate |
2023-11-28
|
decimalLongitude |
178.425933
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decimalLatitude |
-18.1293
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materialSampleID |
USP-24-01-75
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
identificationRemarks |
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scientificName |
Pyura
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eventDate |
2023-11-28
|
decimalLongitude |
178.425933
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decimalLatitude |
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materialSampleID |
USP-24-01-74
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
identificationRemarks |
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decimalLongitude |
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materialSampleID |
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target_gene |
18S
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DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
identificationRemarks |
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scientificName |
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decimalLongitude |
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target_gene |
18S
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DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
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identificationRemarks |
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scientificName |
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2023-11-28
|
decimalLongitude |
178.425933
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decimalLatitude |
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materialSampleID |
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target_gene |
18S
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DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
identificationRemarks |
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scientificName |
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decimalLongitude |
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target_gene |
18S
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DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
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identificationRemarks |
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decimalLongitude |
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materialSampleID |
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target_gene |
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DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
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identificationRemarks |
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scientificName |
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decimalLongitude |
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materialSampleID |
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target_gene |
18S
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DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
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identificationRemarks |
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"scientificName": "Metandrocarpa_taylori",
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"accession": "AY903922.1.1772_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Halocynthia_roretzi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250680",
"accession": "AB013016.1.1751_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Cnemidocarpa_finmarkiensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103870",
"accession": "L12413.1.1763_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_haustor",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251266",
"accession": "AY903926.1.1774_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Halocynthia_igaboja",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250677",
"accession": "AY903925.1.1772_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
4.0
|
id |
efa1f547-9350-4ff4-bfa0-1830f453ad5a
|
scientificName |
Pyura
|
eventDate |
2023-11-28
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-89
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pyura",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103524",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Metandrocarpa_taylori",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250836",
"accession": "AY903922.1.1772_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Halocynthia_roretzi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250680",
"accession": "AB013016.1.1751_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Cnemidocarpa_finmarkiensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103870",
"accession": "L12413.1.1763_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_haustor",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251266",
"accession": "AY903926.1.1774_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Halocynthia_igaboja",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250677",
"accession": "AY903925.1.1772_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
2.0
|
|