| Occurrences: |
view occurrences
| id |
d5760662-ba3a-4db5-b82e-63de75bd155a
|
| scientificName |
Amphibalanus variegatus
|
| AphiaID |
467513
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| eventID |
SUVA3_20231128_S2B
|
| materialSampleID |
USP-24-01-170
|
| target_gene |
COI
|
| DNA_sequence |
TTTATCTAGAAATATTGCTCATTCTGGAGCTTCTGTAGATTTATCTATTTTCTCTTTACATTTAGCAGGAGCTTCCTCAATTTTAGGAGCTATTAATTTTATATCAACTGTAATTAATATACGAGCTGAAACCTTAACATTTGATCGACTACCTTTATTTGTATGAAGTGTATTTATTACTGTAATTTTATTATTATTATCCTTACCAGTTTTAGCAGGAGCTATTACTATACTCCTTACAGATCGAAATTTAAATACATCATTTTTTGATCCAACAGGGGGAGGGGATCCTATCTTATACCAACATTTATTT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Amphibalanus variegatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467513",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Amphibalanus variegatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467513",
"accession": "MK995342",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Amphibalanus variegatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467513",
"accession": "MK995343",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Amphibalanus variegatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467513",
"accession": "MK995345",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Amphibalanus variegatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467513",
"accession": "MW196407",
"identity": 0.997,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Amphibalanus variegatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467513",
"accession": "MW196408",
"identity": 0.997,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
15.0
|
| id |
48b7d510-29b5-40ef-878a-28fffcef3fcb
|
| scientificName |
Amphibalanus variegatus
|
| AphiaID |
467513
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| eventID |
SUVA3_20231128_S3C
|
| materialSampleID |
USP-24-01-174
|
| target_gene |
COI
|
| DNA_sequence |
TTTATCTAGAAATATTGCTCATTCTGGAGCTTCTGTAGATTTATCTATTTTTTCTTTACATTTAGCAGGAGCTTCCTCAATTTTAGGAGCTATTAATTTTATATCAACTGTAATTAATATACGAGCTGAAACCTTAACATTTGATCGACTACCTTTATTTGTATGAAGTGTATTCATTACTGTGATTTTATTATTATTATCCTTACCAGTTTTAGCAGGAGCTATTACTATGCTCCTTACAGATCGAAATTTAAATACATCATTTTTTGATCCAACAGGAGGAGGAGATCCAATCTTATACCAACATTTATTT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Amphibalanus variegatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467513",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Amphibalanus variegatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467513",
"accession": "JQ035520",
"identity": 0.997,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Amphibalanus variegatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467513",
"accession": "JQ035521",
"identity": 0.997,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Amphibalanus variegatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467513",
"accession": "KC138446",
"identity": 0.99,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Amphibalanus variegatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467513",
"accession": "KC138447",
"identity": 0.99,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Amphibalanus variegatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467513",
"accession": "JQ035522",
"identity": 0.981,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
4.0
|
|