PacMAN decision support system

Potential detection of Microcosmus squamiger in Fiji

Description:

Potential detection of Microcosmus squamiger with confidence low on 2022-02-16 in material sample S43, marker 18S

Confidence:

low

Risk:

high priority view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Microcosmus squamiger
Chordata > Ascidiacea > Stolidobranchia > Pyuridae
WoRMS: 236666

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

0.995

Reads:

3.0

Names:

Priority lists:

Top 25 Marine non-indigenous species for the Pacific region

Occurrences:

view occurrences

id	48d1bbba-3a31-43e3-add6-5444548c9f3c
scientificName	Microcosmus
eventDate	2022-02-16
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S43
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTTACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103522", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Microcosmus_squamiger", "scientificNameID": "urn:lsid:marinespecies.org:taxname:236666", "accession": "FM244855.1.1786_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Microcosmus_exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "accession": "KT387603.1.1766_U", "identity": 0.995, "query_cover": 0.9952 } ] }
organismQuantity	3.0

id	74cf9d56-0ad4-4c1f-8341-a8c582b2f9fd
scientificName	Microcosmus exasperatus
AphiaID	103838
eventDate	2022-02-16
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S43
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Microcosmus_exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "accession": "KT387603.1.1766_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Microcosmus_squamiger", "scientificNameID": "urn:lsid:marinespecies.org:taxname:236666", "accession": "FM244855.1.1786_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	41.0

id	8f702bd1-ddde-468f-8516-8f00a87d5b72
scientificName	Microcosmus exasperatus
AphiaID	103838
eventDate	2022-02-16
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S21
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Microcosmus_exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "accession": "KT387603.1.1766_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Microcosmus_squamiger", "scientificNameID": "urn:lsid:marinespecies.org:taxname:236666", "accession": "FM244855.1.1786_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	16.0

id	cd1cb316-0f05-437b-83cf-3ec7e730054e
scientificName	Microcosmus exasperatus
AphiaID	103838
eventDate	2022-02-16
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S22
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Microcosmus_exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "accession": "KT387603.1.1766_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Microcosmus_squamiger", "scientificNameID": "urn:lsid:marinespecies.org:taxname:236666", "accession": "FM244855.1.1786_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	11.0

id	5cce5a44-0bf0-4800-a7d7-58873d4f1ccd
scientificName	Microcosmus exasperatus
AphiaID	103838
eventDate	2022-02-16
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S9
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Microcosmus_exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "accession": "KT387603.1.1766_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Microcosmus_squamiger", "scientificNameID": "urn:lsid:marinespecies.org:taxname:236666", "accession": "FM244855.1.1786_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	1.0

Microcosmus squamiger does not have an offial status in Fiji.

No notes found.