identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Crassostrea madrasensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819168",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "KM373585",
"identity": 1,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "HQ661022",
"identity": 0.993,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "HQ661023",
"identity": 0.993,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "KM373586",
"identity": 0.993,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "KM373588",
"identity": 0.993,
"query_cover": 0.9967
}
]
}
|