| Occurrences: |
view occurrences
| id |
7a53155b-f0bc-46aa-b6f3-f462de58aad7
|
| scientificName |
Ecteinascidia turbinata
|
| AphiaID |
103756
|
| eventDate |
2024-02-28
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-202
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGCTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGCCGGTCCGTCGCAAGGCGTGCACTGGCCGTCCTGGCCTCACCTCCGGTTCCCCGCCGGTGCTCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ecteinascidia turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662244.1.1230_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662235.1.1233_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662245.1.957_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662236.1.1228_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Perophora_sagamiensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250618",
"accession": "AB104873.1.1720_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
92.0
|
| id |
4a85b8ed-acf5-4bfe-9642-a96fd94d9a3e
|
| scientificName |
Ecteinascidia turbinata
|
| AphiaID |
103756
|
| eventDate |
2024-02-28
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-201
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGCTGCGGTTAAAAAGCTCGTAGTTGGACTTTGGGCGCGGGCGGCCGGTCCGTCGAAAGGCGTGCACTGGCCGTTCCCGGCCTCGACCTCCGGTTTCCCGCCGGTGCTCTTGACTGAGTGTCGGCGGCGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ecteinascidia turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662238.1.1220_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
55.0
|
| id |
54413b4c-17d7-474a-8c8a-d03c3bdfcd69
|
| scientificName |
Ecteinascidia turbinata
|
| AphiaID |
103756
|
| eventDate |
2024-02-28
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-197
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGCTGCGGTTAAAAAGCTCGTAGTTGGACTTTGGGCGCGGGCGGCCGGTCCGTCGAAAGGCGTGCACTGGCCGTTCCCGGCCTCGACCTCCGGTTTCCCGCCGGTGCTCTTGACTGAGTGTCGGCGGCGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ecteinascidia turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662238.1.1220_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
3.0
|
| id |
b995e552-cce8-4735-a92e-108af4b4d9e9
|
| scientificName |
Ecteinascidia turbinata
|
| AphiaID |
103756
|
| eventDate |
2024-02-28
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-196
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGCTGCGGTTAAAAAGCTCGTAGTTGGACTTTGGGCGCGGGCGGCCGGTCCGTCGAAAGGCGTGCACTGGCCGTTCCCGGCCTCGACCTCCGGTTTCCCGCCGGTGCTCTTGACTGAGTGTCGGCGGCGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ecteinascidia turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662238.1.1220_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
3.0
|
|