| Occurrences: |
view occurrences
| id |
dc42eb3e-5a4e-42ce-a84c-cc35b1b2b6e1
|
| scientificName |
Pseudo-nitzschia seriata
|
| AphiaID |
149152
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S41
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTGTGGTGTGTCCAGTCGGCCTTTGCTCTTTGAGTGATTGTGCTGTACTGGTCTGCCATGTTTGGGTGGAATCTGTGTGGCATTAAGTTGTCGTGCAGGGGATGCCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pseudo-nitzschia seriata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149152",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Pseudo-nitzschia turgidula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:246609",
"accession": "FJ222752.1.1219_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bacillariophyceae_XXX_sp.",
"accession": "KC771191.1.1787_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bacillariophyceae_XXX_sp.",
"accession": "KC771189.1.1788_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pseudo-nitzschia seriata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149152",
"accession": "JF698747.1.1613_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pseudo-nitzschia seriata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149152",
"accession": "HM581774.1.1772_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
5.0
|
| id |
4cd2b080-019f-4871-b677-ff34a7772b52
|
| scientificName |
Pseudo-nitzschia seriata
|
| AphiaID |
149152
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S40
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTGTGGTGTGTCCAGTCGGCCTTTGCTCTTTGAGTGATTGTGCTGTACTGGTCTGCCATGTTTGGGTGGAATCTGTGTGGCATTAAGTTGTCGTGCAGGGGATGCCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pseudo-nitzschia seriata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149152",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Pseudo-nitzschia turgidula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:246609",
"accession": "FJ222752.1.1219_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bacillariophyceae_XXX_sp.",
"accession": "KC771191.1.1787_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bacillariophyceae_XXX_sp.",
"accession": "KC771189.1.1788_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pseudo-nitzschia seriata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149152",
"accession": "JF698747.1.1613_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pseudo-nitzschia seriata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149152",
"accession": "HM581774.1.1772_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
4.0
|
| id |
f2f8f3c8-0e69-43f0-a5cc-f691e19d7071
|
| scientificName |
Pseudo-nitzschia seriata
|
| AphiaID |
149152
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S35
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTGTGGTGTGTCCAGTCGGCCTTTGCTCTTTGAGTGATTGTGCTGTACTGGTCTGCCATGTTTGGGTGGAATCTGTGTGGCATTAAGTTGTCGTGCAGGGGATGCCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pseudo-nitzschia seriata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149152",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Pseudo-nitzschia turgidula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:246609",
"accession": "FJ222752.1.1219_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bacillariophyceae_XXX_sp.",
"accession": "KC771191.1.1787_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bacillariophyceae_XXX_sp.",
"accession": "KC771189.1.1788_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pseudo-nitzschia seriata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149152",
"accession": "JF698747.1.1613_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pseudo-nitzschia seriata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149152",
"accession": "HM581774.1.1772_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
3.0
|
|