| Occurrences: |
view occurrences
| id |
b577d1b2-feb2-4f67-92ea-ebbab53fd119
|
| scientificName |
Pyura herdmani
|
| AphiaID |
251268
|
| eventDate |
2023-05-17
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-21
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAGCACGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pyura herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Pyura_sp.",
"accession": "JF961822.1.1702_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"accession": "JF961805.1.1702_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_praeputialis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251292",
"accession": "JF961807.1.1702_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"accession": "JF961796.1.1702_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"accession": "JF961801.1.1702_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
2078.0
|
| id |
4e3454f7-f351-4658-81ad-6cc989c59fe7
|
| scientificName |
Pyura
|
| eventDate |
2023-05-17
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-21
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTAGGGTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTTACTGGCGGCGTCTGCCTTGCCTTCGGTTCTCCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGATAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pyura sp.",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Pyura_sp.",
"accession": "JF961822.1.1702_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pyura_praeputialis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251292",
"accession": "JF961807.1.1702_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pyura_praeputialis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251292",
"accession": "JF961808.1.1702_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pyura_praeputialis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251292",
"accession": "JF961810.1.1702_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pyura_sp.",
"accession": "JF961816.1.1702_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
| id |
a4073d33-2642-4cf3-9446-ca6301769572
|
| scientificName |
Pyura
|
| eventDate |
2023-05-17
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-21
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAGCACGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGCTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pyura",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103524",
"confidence": 0.96
},
{
"method": "VSEARCH",
"scientificName": "Pyura_sp.",
"accession": "JF961822.1.1702_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"accession": "JF961805.1.1702_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_praeputialis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251292",
"accession": "JF961807.1.1702_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"accession": "JF961796.1.1702_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"accession": "JF961801.1.1702_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
13.0
|
|