PacMAN decision support system

Potential detection of Symplegma viride in Fiji

Description:

Potential detection of Symplegma viride with confidence low on 2021-12-07 in material sample S32, marker 18S

Confidence:

low

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Symplegma viride
Chordata > Ascidiacea > Stolidobranchia > Styelidae
WoRMS: 212501

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

3.0

Names:

Occurrences:

view occurrences

id	a05ff143-657a-4412-8d74-1804b339715a
scientificName	Symplegma
eventDate	2021-12-07
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S32
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Symplegma", "scientificNameID": "urn:lsid:marinespecies.org:taxname:206885", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Symplegma_reptans", "scientificNameID": "urn:lsid:marinespecies.org:taxname:251438", "accession": "AF165826.1.1066_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Symplegma_viride", "scientificNameID": "urn:lsid:marinespecies.org:taxname:212501", "accession": "DQ346655.1.1765_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_planus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:215992", "accession": "DQ346653.1.1798_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botrylloides_violacea", "accession": "AY903927.1.1803_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_schlosseri", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103862", "accession": "AB211066.1.1750_U", "identity": 0.971, "query_cover": 0.9952 } ] }
organismQuantity	3.0

id	8e162ef9-2630-4508-af90-d97b9c8ebd87
scientificName	Symplegma
eventDate	2021-12-07
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S29
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Symplegma", "scientificNameID": "urn:lsid:marinespecies.org:taxname:206885", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Symplegma_reptans", "scientificNameID": "urn:lsid:marinespecies.org:taxname:251438", "accession": "AF165826.1.1066_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Symplegma_viride", "scientificNameID": "urn:lsid:marinespecies.org:taxname:212501", "accession": "DQ346655.1.1765_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_planus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:215992", "accession": "DQ346653.1.1798_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botrylloides_violacea", "accession": "AY903927.1.1803_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_schlosseri", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103862", "accession": "AB211066.1.1750_U", "identity": 0.971, "query_cover": 0.9952 } ] }
organismQuantity	2.0

id	dcd5a48c-ff07-4f13-98c0-fbead3515426
scientificName	Symplegma
eventDate	2021-12-07
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S30
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Symplegma", "scientificNameID": "urn:lsid:marinespecies.org:taxname:206885", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Symplegma_reptans", "scientificNameID": "urn:lsid:marinespecies.org:taxname:251438", "accession": "AF165826.1.1066_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Symplegma_viride", "scientificNameID": "urn:lsid:marinespecies.org:taxname:212501", "accession": "DQ346655.1.1765_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_planus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:215992", "accession": "DQ346653.1.1798_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botrylloides_violacea", "accession": "AY903927.1.1803_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_schlosseri", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103862", "accession": "AB211066.1.1750_U", "identity": 0.971, "query_cover": 0.9952 } ] }
organismQuantity	2.0

id	4e59f70c-2274-4dae-8579-508acbbe8d6f
scientificName	Symplegma
eventDate	2021-12-07
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S49
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Symplegma", "scientificNameID": "urn:lsid:marinespecies.org:taxname:206885", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Symplegma_reptans", "scientificNameID": "urn:lsid:marinespecies.org:taxname:251438", "accession": "AF165826.1.1066_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Symplegma_viride", "scientificNameID": "urn:lsid:marinespecies.org:taxname:212501", "accession": "DQ346655.1.1765_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_planus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:215992", "accession": "DQ346653.1.1798_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botrylloides_violacea", "accession": "AY903927.1.1803_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_schlosseri", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103862", "accession": "AB211066.1.1750_U", "identity": 0.971, "query_cover": 0.9952 } ] }
organismQuantity	1.0

id	8f933973-6165-4d13-a411-835483cfb256
scientificName	Symplegma
eventDate	2021-12-07
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S55
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Symplegma", "scientificNameID": "urn:lsid:marinespecies.org:taxname:206885", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Symplegma_reptans", "scientificNameID": "urn:lsid:marinespecies.org:taxname:251438", "accession": "AF165826.1.1066_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Symplegma_viride", "scientificNameID": "urn:lsid:marinespecies.org:taxname:212501", "accession": "DQ346655.1.1765_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_planus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:215992", "accession": "DQ346653.1.1798_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botrylloides_violacea", "accession": "AY903927.1.1803_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_schlosseri", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103862", "accession": "AB211066.1.1750_U", "identity": 0.971, "query_cover": 0.9952 } ] }
organismQuantity	1.0

id	da63a77e-79f9-4343-906f-e0646fb7205b
scientificName	Symplegma
eventDate	2021-12-07
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S32
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCAGTGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Symplegma", "scientificNameID": "urn:lsid:marinespecies.org:taxname:206885", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Symplegma_reptans", "scientificNameID": "urn:lsid:marinespecies.org:taxname:251438", "accession": "AF165826.1.1066_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Symplegma_viride", "scientificNameID": "urn:lsid:marinespecies.org:taxname:212501", "accession": "DQ346655.1.1765_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	1.0

Symplegma viride in Fiji

Status

Symplegma viride does not have an offial status in Fiji.

Notes

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