| Occurrences: |
view occurrences
| id |
4efee4fd-36aa-4e72-8ed3-f1e629c9a04f
|
| scientificName |
Tubastraea coccinea
|
| AphiaID |
291251
|
| eventDate |
2023-08-15
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-38
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCGGGATGGCCCGGCCGGTCTGCCGCAAGGTATGTTACTGGCCGAGCTGTTCTTCCTCGCAAAGACTGTGTGTGCTCTTAACTGAGTGTGCTCAGGATCTGCGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Tubastraea coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"confidence": 0.91
},
{
"method": "VSEARCH",
"scientificName": "Tubastraea_coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"accession": "JQ688008.1.1797_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Tubastraea_coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"accession": "AJ133556.1.1797_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Lobactis_scutaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:716542",
"accession": "AF052884.1.1797_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Tubastraea_coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"accession": "Z92906.1.1797_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Rhizopsammia_minuta",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:210738",
"accession": "Z92907.1.1799_U",
"identity": 0.991,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
3.0
|
| id |
b2ccd6c0-35c9-4053-a178-111d0a126859
|
| scientificName |
Tubastraea coccinea
|
| AphiaID |
291251
|
| eventDate |
2023-08-15
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-36
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCGGGATGGCCCGGCCGGTCTGCCGCAAGGTATGTTACTGGCCGAGCTGTTCTTCCTCGCAAAGACTGTGTGTGCTCTTAACTGAGTGTGCTCAGGATCTGCGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Tubastraea coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"confidence": 0.91
},
{
"method": "VSEARCH",
"scientificName": "Tubastraea_coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"accession": "JQ688008.1.1797_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Tubastraea_coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"accession": "AJ133556.1.1797_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Lobactis_scutaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:716542",
"accession": "AF052884.1.1797_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Tubastraea_coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"accession": "Z92906.1.1797_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Rhizopsammia_minuta",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:210738",
"accession": "Z92907.1.1799_U",
"identity": 0.991,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
| id |
e9c825ae-b5a1-4261-a380-420d55deee6e
|
| scientificName |
Tubastraea coccinea
|
| AphiaID |
291251
|
| eventDate |
2023-08-15
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-37
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCGGGATGGCCCGGCCGGTCTGCCGCAAGGTATGTTACTGGCCGAGCTGTTCTTCCTCGCAAAGACTGTGTGTGCTCTTAACTGAGTGTGCTCAGGATCTGCGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Tubastraea coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"confidence": 0.91
},
{
"method": "VSEARCH",
"scientificName": "Tubastraea_coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"accession": "JQ688008.1.1797_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Tubastraea_coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"accession": "AJ133556.1.1797_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Lobactis_scutaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:716542",
"accession": "AF052884.1.1797_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Tubastraea_coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"accession": "Z92906.1.1797_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Rhizopsammia_minuta",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:210738",
"accession": "Z92907.1.1799_U",
"identity": 0.991,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|