| Occurrences: |
view occurrences
| id |
ea4800d6-18ca-466c-b904-c228a2bd3999
|
| scientificName |
Hydroides
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-08
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTATCGTCTCGGTGGTCCTGTTCACGCAGGCACTGCCTTGATGACCTAACCGATGGTTGAACGACTCCGAGTGCCCTTCACTGGGTGCTCGTGGGTGGCCATCGCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Hydroides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:129566",
"confidence": 0.83
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_ezoensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131003",
"accession": "EU184062.1.1745_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_minax",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131007",
"accession": "EU184063.1.1735_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_tuberculatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328479",
"accession": "EU184059.1.1740_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_trivesiculosus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328477",
"accession": "EU184060.1.1723_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_sanctaecrucis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:333645",
"accession": "EU184061.1.1774_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
90.0
|
| id |
50c218c3-37d4-403a-bc69-4edbed07deee
|
| scientificName |
Hydroides
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-09
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTATCGTCTCGGTGGTCCTGTTCACGCAGGCACTGCCTTGATGACCTAACCGATGGTTGAACGACTCCGAGTGCCCTTCACTGGGTGCTCGTGGGTGGCCATCGCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Hydroides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:129566",
"confidence": 0.83
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_ezoensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131003",
"accession": "EU184062.1.1745_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_minax",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131007",
"accession": "EU184063.1.1735_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_tuberculatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328479",
"accession": "EU184059.1.1740_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_trivesiculosus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328477",
"accession": "EU184060.1.1723_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_sanctaecrucis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:333645",
"accession": "EU184061.1.1774_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
87.0
|
| id |
d1d04bf2-83c1-4c31-957c-73f7eb531c0f
|
| scientificName |
Hydroides
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-07
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTATCGTCTCGGTGGTCCTGTTCACGCAGGCACTGCCTTGATGACCTAACCGATGGTTGAACGACTCCGAGTGCCCTTCACTGGGTGCTCGTGGGTGGCCATCGCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Hydroides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:129566",
"confidence": 0.83
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_ezoensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131003",
"accession": "EU184062.1.1745_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_minax",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131007",
"accession": "EU184063.1.1735_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_tuberculatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328479",
"accession": "EU184059.1.1740_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_trivesiculosus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328477",
"accession": "EU184060.1.1723_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_sanctaecrucis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:333645",
"accession": "EU184061.1.1774_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
19.0
|
| id |
9171c24e-c6e7-4a1d-b4af-109a7de14add
|
| scientificName |
Hydroides
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-03
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTATCGTCTCGGTGGTCCTGTTCACGCAGGCACTGCCTTGATGACCTAACCGATGGTTGAACGACTCCGAGTGCCCTTCACTGGGTGCTCGTGGGTGGCCATCGCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Hydroides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:129566",
"confidence": 0.83
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_ezoensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131003",
"accession": "EU184062.1.1745_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_minax",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131007",
"accession": "EU184063.1.1735_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_tuberculatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328479",
"accession": "EU184059.1.1740_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_trivesiculosus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328477",
"accession": "EU184060.1.1723_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_sanctaecrucis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:333645",
"accession": "EU184061.1.1774_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
11.0
|
|