| Occurrences: |
view occurrences
| id |
5250d4ef-4446-440d-ae4c-6f1d8f1800f6
|
| scientificName |
Magallana gigas
|
| AphiaID |
836033
|
| eventDate |
2023-05-17
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-21
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCCTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"confidence": 0.8
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "AB064942.1.1820_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "AFTI01027729.1.1382_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ostrea edulis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140658",
"accession": "EU660786.1.875_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "EU660790.1.875_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ostrea chilensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397160",
"accession": "EU660788.1.875_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
7.0
|
| id |
ac789bce-6e94-436c-934b-f9048477d85a
|
| scientificName |
Magallana gigas
|
| AphiaID |
836033
|
| eventDate |
2023-05-17
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-21
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCTTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "AB064942.1.1820_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "AFTI01027729.1.1382_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ostrea edulis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140658",
"accession": "EU660786.1.875_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "EU660790.1.875_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ostrea chilensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397160",
"accession": "EU660788.1.875_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
590.0
|
|