| Occurrences: |
view occurrences
| id |
5327cca8-3992-4831-9ef2-6353e504618c
|
| scientificName |
Hydroides
|
| eventDate |
2024-02-28
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-201
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTATCGTCTCGGTGGTCCTGTTCACGCAGGCACTGCCTTGATGACCTAACCGATGGTTGAACGACTCCGAGTGCCCTTCACTGGGTGCTCGTGGGTGGCCATCGCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Hydroides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:129566",
"confidence": 0.83
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_ezoensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131003",
"accession": "EU184062.1.1745_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_minax",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131007",
"accession": "EU184063.1.1735_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_tuberculatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328479",
"accession": "EU184059.1.1740_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_trivesiculosus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328477",
"accession": "EU184060.1.1723_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_sanctaecrucis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:333645",
"accession": "EU184061.1.1774_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
26.0
|
| id |
a999b6a0-f401-47c7-9bd0-273d51a44a80
|
| scientificName |
Hydroides
|
| eventDate |
2024-02-28
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-202
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTATCGTCTCGGTGGTCCTGTTCACGCAGGCACTGCCTTGATGACCTAACCGATGGTTGAACGACTCCGAGTGCCCTTCACTGGGTGCTCGTGGGTGGCCATCGCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Hydroides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:129566",
"confidence": 0.83
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_ezoensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131003",
"accession": "EU184062.1.1745_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_minax",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131007",
"accession": "EU184063.1.1735_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_tuberculatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328479",
"accession": "EU184059.1.1740_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_trivesiculosus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328477",
"accession": "EU184060.1.1723_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_sanctaecrucis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:333645",
"accession": "EU184061.1.1774_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
17.0
|
| id |
60f4323e-bb3a-4564-aad5-d52ce92f4df2
|
| scientificName |
Hydroides
|
| eventDate |
2024-02-28
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-200
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTATCGTCTCGGTGGTCCTGTTCACGCAGGCACTGCCTTGATGACCTAACCGATGGTTGAACGACTCCGAGTGCCCTTCACTGGGTGCTCGTGGGTGGCCATCGCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Hydroides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:129566",
"confidence": 0.83
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_ezoensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131003",
"accession": "EU184062.1.1745_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_minax",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131007",
"accession": "EU184063.1.1735_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_tuberculatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328479",
"accession": "EU184059.1.1740_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_trivesiculosus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328477",
"accession": "EU184060.1.1723_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_sanctaecrucis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:333645",
"accession": "EU184061.1.1774_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
6.0
|
| id |
6c313847-ff4b-4c57-bd83-c1e092233b82
|
| scientificName |
Hydroides
|
| eventDate |
2024-02-28
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-197
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTATCGTCTCGGTGGTCCTGTTCACGCAGGCACTGCCTTGATGACCTAACCGATGGTTGAACGACTCCGAGTGCCCTTCACTGGGTGCTCGTGGGTGGCCATCGCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Hydroides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:129566",
"confidence": 0.83
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_ezoensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131003",
"accession": "EU184062.1.1745_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_minax",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131007",
"accession": "EU184063.1.1735_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_tuberculatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328479",
"accession": "EU184059.1.1740_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_trivesiculosus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328477",
"accession": "EU184060.1.1723_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_sanctaecrucis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:333645",
"accession": "EU184061.1.1774_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
3.0
|
|