| Occurrences: |
view occurrences
| id |
5470a6a1-8de2-4d05-ada1-16245fcd755e
|
| scientificName |
Isognomon
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S21
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTCCAGGCTTGCGGTCCGCTCCTTGGCGGTCACTGCTCGATCCTGACCTACCTCACCGGTTTTTGCCCTTGGTGCTCTTGACTGAGTGTCTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Isognomon",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:138091",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Isognomon spathulata",
"accession": "HQ329348.1.1772_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Isognomon perna",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:208470",
"accession": "AB594388.1.1728_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Isognomon bicolor",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:420737",
"accession": "HQ329332.1.1772_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Isognomon ephippium",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:208462",
"accession": "AB594382.1.1731_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Isognomon ephippium",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:208462",
"accession": "HQ329335.1.1773_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
| id |
677c3ecc-a43a-4905-9c4b-973629401f20
|
| scientificName |
Isognomon
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S22
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTCCAGGCTTGCGGTCCGCTCCTTGGCGGTCACTGCTCGATCCTGACCTACCTCACCGGTTTTTGCCCTTGGTGCTCTTGACTGAGTGTCTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Isognomon",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:138091",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Isognomon spathulata",
"accession": "HQ329348.1.1772_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Isognomon perna",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:208470",
"accession": "AB594388.1.1728_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Isognomon bicolor",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:420737",
"accession": "HQ329332.1.1772_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Isognomon ephippium",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:208462",
"accession": "AB594382.1.1731_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Isognomon ephippium",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:208462",
"accession": "HQ329335.1.1773_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|