| Occurrences: |
view occurrences
| id |
b13267fd-dea9-4757-9b7e-31f710f2c923
|
| scientificName |
Diplosoma
|
| eventDate |
2024-02-28
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-201
|
| target_gene |
18S
|
| DNA_sequence |
GGCCCCGAGATTTATTGCGCGGCAATGATTGAGAGGGACGGACGGGGGCATTCGTACTGCGCCGGGAGAGGTGAAATTCGCGGATCGGCGCAAGACGAACCGAAGCGAAGGCGTCTGCCAAGGACGTTTTCCTTGATCAAGAGCGAGAGTCGGAGGCTCC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Diplosoma",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103457",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_simile",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250415",
"accession": "AB211103.1.2075_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_simile",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250415",
"accession": "AB211106.1.2075_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_simileguwa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:389764",
"accession": "AB211107.1.2075_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_ooru",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:266061",
"accession": "AB211098.1.2081_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_simileguwa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:389764",
"accession": "AB211108.1.2075_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
143.0
|
| id |
54c81c19-e087-4d87-9a16-a147df35b34b
|
| scientificName |
Diplosoma
|
| eventDate |
2024-02-28
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-202
|
| target_gene |
18S
|
| DNA_sequence |
GGCCCCGAGATTTATTGCGCGGCAATGATTGAGAGGGACGGACGGGGGCATTCGTACTGCGCCGGGAGAGGTGAAATTCGCGGATCGGCGCAAGACGAACCGAAGCGAAGGCGTCTGCCAAGGACGTTTTCCTTGATCAAGAGCGAGAGTCGGAGGCTCC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Diplosoma",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103457",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_simile",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250415",
"accession": "AB211103.1.2075_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_simile",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250415",
"accession": "AB211106.1.2075_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_simileguwa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:389764",
"accession": "AB211107.1.2075_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_ooru",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:266061",
"accession": "AB211098.1.2081_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_simileguwa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:389764",
"accession": "AB211108.1.2075_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
123.0
|
| id |
a3786929-8f7e-4498-8fc8-c7e28bed3e0d
|
| scientificName |
Diplosoma
|
| eventDate |
2024-02-28
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-200
|
| target_gene |
18S
|
| DNA_sequence |
GGCCCCGAGATTTATTGCGCGGCAATGATTGAGAGGGACGGACGGGGGCATTCGTACTGCGCCGGGAGAGGTGAAATTCGCGGATCGGCGCAAGACGAACCGAAGCGAAGGCGTCTGCCAAGGACGTTTTCCTTGATCAAGAGCGAGAGTCGGAGGCTCC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Diplosoma",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103457",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_simile",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250415",
"accession": "AB211103.1.2075_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_simile",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250415",
"accession": "AB211106.1.2075_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_simileguwa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:389764",
"accession": "AB211107.1.2075_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_ooru",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:266061",
"accession": "AB211098.1.2081_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_simileguwa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:389764",
"accession": "AB211108.1.2075_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
104.0
|
| id |
803c97f2-6c8c-4bfc-bcd3-f1e498ebb20c
|
| scientificName |
Diplosoma
|
| eventDate |
2024-02-28
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-92
|
| target_gene |
18S
|
| DNA_sequence |
GGCCCCGAGATTTATTGCGCGGCAATGATTGAGAGGGACGGACGGGGGCATTCGTACTGCGCCGGGAGAGGTGAAATTCGCGGATCGGCGCAAGACGAACCGAAGCGAAGGCGTCTGCCAAGGACGTTTTCCTTGATCAAGAGCGAGAGTCGGAGGCTCC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Diplosoma",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103457",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_simile",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250415",
"accession": "AB211103.1.2075_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_simile",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250415",
"accession": "AB211106.1.2075_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_simileguwa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:389764",
"accession": "AB211107.1.2075_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_ooru",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:266061",
"accession": "AB211098.1.2081_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_simileguwa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:389764",
"accession": "AB211108.1.2075_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
35.0
|
|