| Occurrences: |
view occurrences
| id |
559373ff-ab56-4988-bb4b-411b2572e875
|
| scientificName |
Pinctada fucata
|
| AphiaID |
397170
|
| eventDate |
2024-02-28
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-195
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGTTTAAAAAGCTCGTAGTTGGATCTCGGGTCCAGGCTTGCGGTCCGCTCCTTGGCGGTCACTGCTTGATCCTGACCTACCTGACCGGTTTTTGCCCTTGGTGCTCTTGATTGAGTGTCTCGGGTGACCGGAACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pinctada fucata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397170",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Pinctada fucata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397170",
"accession": "AY028625.1.1789_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pinctada fucata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397170",
"accession": "AB214458.1.1824_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pinctada maculata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:464497",
"accession": "AB594364.1.1711_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pinctada radiata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140890",
"accession": "AB214457.1.1824_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pinctada fucata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397170",
"accession": "AB594362.1.1711_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
5.0
|
| id |
c554cc3d-2908-4a00-aa6e-9dbc8b64c7a0
|
| scientificName |
Pinctada fucata
|
| AphiaID |
397170
|
| eventDate |
2024-02-28
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-195
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAACCAGAGGTAATGATTAAGAGGGACTGACGGGGGCATTGGTATTGCGGTGTTAGAGGTGAAATTCTTGGATCGCCGCAAGACTAACAGCTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGATAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pinctada fucata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397170",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Pinctada fucata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397170",
"accession": "AY028625.1.1789_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pinctada fucata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397170",
"accession": "AB214458.1.1824_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pinctada maculata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:464497",
"accession": "AB594364.1.1711_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pinctada radiata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140890",
"accession": "AB214457.1.1824_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pinctada fucata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397170",
"accession": "AB594362.1.1711_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
5.0
|
|