| Occurrences: |
view occurrences
| id |
57190afe-8065-4333-9e8a-0d44cb3b6468
|
| scientificName |
Mytiloides
|
| eventDate |
2023-05-31
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-28
|
| target_gene |
18S
|
| DNA_sequence |
TGCTGGTTTTCGGAGCTCGAGGTAATGATTAAGAGGGACTGACGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACCGCTGCGAAAGCGTTTGCCAAGAATGTTTTCATTAGTCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Mytiloida",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1506984",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Xenostrobus securis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140485",
"accession": "FJ949127.1.1708_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Xenostrobus securis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140485",
"accession": "FJ949125.1.1657_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Xenostrobus securis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140485",
"accession": "FJ949134.1.1652_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Xenostrobus securis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140485",
"accession": "FJ949124.1.1657_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Xenostrobus securis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140485",
"accession": "FJ949130.1.1680_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
2.0
|
| id |
ec0a1f29-0d88-49ec-bbcd-d3f74fb9a3d1
|
| scientificName |
Xenostrobus securis
|
| AphiaID |
140485
|
| eventDate |
2023-05-31
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-28
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTCCAGGCTGGCGGTCCGGCGCATGCCGGTTACTGCTTGTCCTGACCTACCTCCCGGTCGCGCCCTTGGTGCTCTTGATTGAGTGTCTCGGGTCGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Xenostrobus securis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140485",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Xenostrobus securis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140485",
"accession": "EF186010.1.874_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Xenostrobus securis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140485",
"accession": "FJ949127.1.1708_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Xenostrobus securis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140485",
"accession": "EF186014.1.874_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Xenostrobus securis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140485",
"accession": "EF186008.1.874_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Xenostrobus securis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140485",
"accession": "DQ984672.1.877_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
2.0
|
|