| Occurrences: |
view occurrences
| id |
b6ffd25f-6445-4f70-95c2-6771fd576e3a
|
| scientificName |
Ciona savignyi
|
| AphiaID |
250292
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S68
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ciona savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"confidence": 0.96
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01030526.2.1210_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01059881.1228.2676_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_herdmanni",
"accession": "FM244847.1.1607_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01041541.1.1348_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01045610.1.1202_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
9.0
|
| id |
5747d540-4fef-4518-aaa2-2c10fae628fe
|
| scientificName |
Ciona savignyi
|
| AphiaID |
250292
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S40
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ciona savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"confidence": 0.96
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01030526.2.1210_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01059881.1228.2676_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_herdmanni",
"accession": "FM244847.1.1607_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01041541.1.1348_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01045610.1.1202_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
4.0
|
| id |
989765c6-ff94-4ac9-96d0-c47ab409c202
|
| scientificName |
Ciona savignyi
|
| AphiaID |
250292
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S52
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ciona savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"confidence": 0.96
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01030526.2.1210_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01059881.1228.2676_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_herdmanni",
"accession": "FM244847.1.1607_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01041541.1.1348_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01045610.1.1202_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
2.0
|
|