| Occurrences: |
view occurrences
| id |
5b142131-ae2a-4c5a-8377-1e31546dc11b
|
| scientificName |
Macrorhynchia phoenicea
|
| AphiaID |
284199
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S21
|
| target_gene |
18S
|
| DNA_sequence |
TCGTTGGTTTCGAGGACCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGTAGTCAGAGGTGAAATTCTTGGATCTACGAAAGACGAACAACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Macrorhynchia phoenicea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284199",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Gymnangium_hians",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:220593",
"accession": "Z86122.1.1808_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_secundaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117628",
"accession": "FJ550575.1.1716_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Macrorhynchia_sibogae",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284204",
"accession": "FJ550586.1.1685_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_kiwiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284814",
"accession": "FJ550534.1.1717_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Halopteris_carinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:287297",
"accession": "FJ550576.1.1717_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
| id |
8ead4f7c-700d-4a5f-8d04-065061d6f8f7
|
| scientificName |
Macrorhynchia phoenicea
|
| AphiaID |
284199
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S22
|
| target_gene |
18S
|
| DNA_sequence |
TCGTTGGTTTCGAGGACCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGTAGTCAGAGGTGAAATTCTTGGATCTACGAAAGACGAACAACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Macrorhynchia phoenicea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284199",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Gymnangium_hians",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:220593",
"accession": "Z86122.1.1808_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_secundaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117628",
"accession": "FJ550575.1.1716_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Macrorhynchia_sibogae",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284204",
"accession": "FJ550586.1.1685_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_kiwiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284814",
"accession": "FJ550534.1.1717_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Halopteris_carinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:287297",
"accession": "FJ550576.1.1717_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
|