| Occurrences: |
view occurrences
| id |
e6b4f815-33d1-4334-913e-8f25ef6d2c35
|
| scientificName |
Symplegma
|
| eventDate |
2023-05-17
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-21
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Symplegma",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:206885",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Symplegma_reptans",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251438",
"accession": "AF165826.1.1066_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Symplegma_viride",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:212501",
"accession": "DQ346655.1.1765_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botryllus_planus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:215992",
"accession": "DQ346653.1.1798_U",
"identity": 0.976,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botrylloides_violacea",
"accession": "AY903927.1.1803_U",
"identity": 0.976,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botryllus_schlosseri",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103862",
"accession": "AB211066.1.1750_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1487.0
|
| id |
5c7b5d49-1ef6-48eb-b549-dd689b920042
|
| scientificName |
Symplegma
|
| eventDate |
2023-05-17
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-21
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAGGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Symplegma",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:206885",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Symplegma_reptans",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251438",
"accession": "AF165826.1.1066_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Symplegma_viride",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:212501",
"accession": "DQ346655.1.1765_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botryllus_planus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:215992",
"accession": "DQ346653.1.1798_U",
"identity": 0.971,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botrylloides_violacea",
"accession": "AY903927.1.1803_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
6.0
|
|