PacMAN decision support system

Potential detection of Ciona savignyi in Fiji

Description:

Potential detection of Ciona savignyi with confidence medium on 2024-02-28 in material sample USP-24-01-202, marker 18S

Confidence:

medium

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Ciona savignyi
Chordata > Ascidiacea > Phlebobranchia > Cionidae
WoRMS: 250292

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

680.0

Names:

1

Occurrences:

view occurrences

id	9d1f3080-7c31-4176-8ff2-1de2b0518543
scientificName	Ciona savignyi
AphiaID	250292
eventDate	2024-02-28
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-202
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ciona savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01030526.2.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01059881.1228.2676_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ecteinascidia_herdmanni", "accession": "FM244847.1.1607_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01041541.1.1348_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01045610.1.1202_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	680.0

id	8ac9c744-f6d5-42e1-b149-308522c17f13
scientificName	Ciona savignyi
AphiaID	250292
eventDate	2024-02-28
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-201
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ciona savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01030526.2.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01059881.1228.2676_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ecteinascidia_herdmanni", "accession": "FM244847.1.1607_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01041541.1.1348_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01045610.1.1202_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	471.0

id	c2b08733-c634-4aea-841c-3dffd9de6219
scientificName	Ciona savignyi
AphiaID	250292
eventDate	2024-02-28
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-200
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ciona savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01030526.2.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01059881.1228.2676_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ecteinascidia_herdmanni", "accession": "FM244847.1.1607_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01041541.1.1348_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01045610.1.1202_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	133.0

id	f77a5f6e-fd80-47d6-ba22-c9b5dc847e51
scientificName	Ciona savignyi
AphiaID	250292
eventDate	2024-02-28
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-197
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ciona savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01030526.2.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01059881.1228.2676_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ecteinascidia_herdmanni", "accession": "FM244847.1.1607_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01041541.1.1348_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01045610.1.1202_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	7.0

id	60108f43-32df-4537-9592-6d02c7c0f738
scientificName	Ciona savignyi
AphiaID	250292
eventDate	2024-02-28
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-196
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ciona savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01030526.2.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01059881.1228.2676_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ecteinascidia_herdmanni", "accession": "FM244847.1.1607_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01041541.1.1348_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01045610.1.1202_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	6.0

id	961d7966-f4e1-4577-9884-7d6aaf9d1ecd
scientificName	Ciona savignyi
AphiaID	250292
eventDate	2024-02-28
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-194
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ciona savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01030526.2.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01059881.1228.2676_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ecteinascidia_herdmanni", "accession": "FM244847.1.1607_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01041541.1.1348_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01045610.1.1202_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	2.0

id	6d719ae7-6161-4149-8e24-7c0646ab2a21
scientificName	Ciona savignyi
AphiaID	250292
eventDate	2024-02-28
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-91
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ciona savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01030526.2.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01059881.1228.2676_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ecteinascidia_herdmanni", "accession": "FM244847.1.1607_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01041541.1.1348_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01045610.1.1202_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	1.0

id	9fec37a9-2f7f-4340-90c3-7c84ab1982b6
scientificName	Ciona savignyi
AphiaID	250292
eventDate	2024-02-28
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-93
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ciona savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01030526.2.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01059881.1228.2676_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ecteinascidia_herdmanni", "accession": "FM244847.1.1607_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01041541.1.1348_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01045610.1.1202_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	1.0

Ciona savignyi in Fiji

Status

Ciona savignyi does not have an offial status in Fiji.

Notes

No notes found.