| Occurrences: |
view occurrences
| id |
60f42d3a-2c84-47b1-9b0a-ad78d6167461
|
| scientificName |
Callopora lineata
|
| AphiaID |
111197
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-08
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAGCAGCGTATATTTATATTGCTGCGTTTAAAAAGCTCGTAGTTGAAGCGTCAGACGCGGGAGGGCGGACGGCCGCACTGGTCGCTCTCGCCCGACCGAGCCAGGCGCAGAGGGCGCGCGTCGCTTGCACTTTGCCGTGTGAGCGCGCCGCCGCTGCACGTTCACCTTGAAGAAATTGAACCGCTTAGAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Callopora lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"confidence": 0.84
},
{
"method": "VSEARCH",
"scientificName": "Cryptosula_pallasiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111343",
"accession": "FJ196129.1.1578_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Cryptosula_pallasiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111343",
"accession": "JN680940.1.1832_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bugula_turrita",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:159783",
"accession": "AY210443.1.1841_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bugula_fulva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111153",
"accession": "FJ152023.1.2123_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Callopora_dumerilii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111196",
"accession": "FJ152025.1.2143_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
24.0
|
| id |
93fd2641-b6e4-4d76-9de0-461798c86d12
|
| scientificName |
Callopora lineata
|
| AphiaID |
111197
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-12
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAGCAGCGTATATTTATATTGCTGCGTTTAAAAAGCTCGTAGTTGAAGCGTCAGACGCGGGAGGGCGGACGGCCGCACTGGTCGCTCTCGCCCGACCGAGCCAGGCGCAGAGGGCGCGCGTCGCTTGCACTTTGCCGTGTGAGCGCGCCGCCGCTGCACGTTCACCTTGAAGAAATTGAACCGCTTAGAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Callopora lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"confidence": 0.84
},
{
"method": "VSEARCH",
"scientificName": "Cryptosula_pallasiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111343",
"accession": "FJ196129.1.1578_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Cryptosula_pallasiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111343",
"accession": "JN680940.1.1832_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bugula_turrita",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:159783",
"accession": "AY210443.1.1841_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bugula_fulva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111153",
"accession": "FJ152023.1.2123_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Callopora_dumerilii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111196",
"accession": "FJ152025.1.2143_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|