PacMAN decision support system

Potential detection of Choromytilus chorus in Fiji

Description:

Potential detection of Choromytilus chorus with confidence low on 2024-02-28 in material sample USP-24-01-200, marker 18S

Confidence:

low

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Choromytilus chorus
Mollusca > Bivalvia > Mytilida > Mytilidae
WoRMS: 506001

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

7.0

Names:

Occurrences:

view occurrences

id	625b661e-0ffc-49d6-a041-64c1f51e66fd
scientificName	Perna viridis
AphiaID	367822
eventDate	2024-02-28
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-200
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTCCCAGGCTTGCGGTCCGACGCACGTCGGTTTACTGCTTGTCCTGACCTACCTCCCGGTTCGCCCTTGGTGCTCTTGACTGAGTGTCTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Perna viridis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:367822", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Choromytilus chorus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:506001", "accession": "DQ640541.1.877_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Perna viridis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:367822", "accession": "DQ640527.1.873_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Choromytilus chorus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:506001", "accession": "DQ640540.1.877_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Perna viridis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:367822", "accession": "EF613234.1.1737_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Choromytilus chorus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:506001", "accession": "DQ640539.1.877_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	7.0

id	63ae4187-6859-443b-9d6a-8947f71288fe
scientificName	Perna viridis
AphiaID	367822
eventDate	2024-02-28
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-198
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTCCCAGGCTTGCGGTCCGACGCACGTCGGTTTACTGCTTGTCCTGACCTACCTCCCGGTTCGCCCTTGGTGCTCTTGACTGAGTGTCTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Perna viridis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:367822", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Choromytilus chorus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:506001", "accession": "DQ640541.1.877_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Perna viridis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:367822", "accession": "DQ640527.1.873_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Choromytilus chorus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:506001", "accession": "DQ640540.1.877_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Perna viridis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:367822", "accession": "EF613234.1.1737_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Choromytilus chorus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:506001", "accession": "DQ640539.1.877_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	2.0

id	b079b7cb-9a91-41b1-b80f-eabc3d61e95c
scientificName	Perna viridis
AphiaID	367822
eventDate	2024-02-28
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-196
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTCCCAGGCTTGCGGTCCGACGCACGTCGGTTTACTGCTTGTCCTGACCTACCTCCCGGTTCGCCCTTGGTGCTCTTGACTGAGTGTCTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Perna viridis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:367822", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Choromytilus chorus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:506001", "accession": "DQ640541.1.877_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Perna viridis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:367822", "accession": "DQ640527.1.873_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Choromytilus chorus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:506001", "accession": "DQ640540.1.877_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Perna viridis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:367822", "accession": "EF613234.1.1737_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Choromytilus chorus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:506001", "accession": "DQ640539.1.877_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	1.0

id	b201d9dd-5f10-4dc9-af20-2d12f7851228
scientificName	Perna viridis
AphiaID	367822
eventDate	2024-02-28
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-197
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTCCCAGGCTTGCGGTCCGACGCACGTCGGTTTACTGCTTGTCCTGACCTACCTCCCGGTTCGCCCTTGGTGCTCTTGACTGAGTGTCTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Perna viridis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:367822", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Choromytilus chorus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:506001", "accession": "DQ640541.1.877_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Perna viridis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:367822", "accession": "DQ640527.1.873_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Choromytilus chorus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:506001", "accession": "DQ640540.1.877_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Perna viridis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:367822", "accession": "EF613234.1.1737_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Choromytilus chorus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:506001", "accession": "DQ640539.1.877_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	1.0

id	b91d8c4c-0bfa-4513-827a-56ce81473467
scientificName	Perna viridis
AphiaID	367822
eventDate	2024-02-28
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-93
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTCCCAGGCTTGCGGTCCGACGCACGTCGGTTTACTGCTTGTCCTGACCTACCTCCCGGTTCGCCCTTGGTGCTCTTGACTGAGTGTCTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Perna viridis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:367822", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Choromytilus chorus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:506001", "accession": "DQ640541.1.877_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Perna viridis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:367822", "accession": "DQ640527.1.873_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Choromytilus chorus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:506001", "accession": "DQ640540.1.877_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Perna viridis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:367822", "accession": "EF613234.1.1737_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Choromytilus chorus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:506001", "accession": "DQ640539.1.877_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	1.0

Choromytilus chorus in Fiji

Status

Choromytilus chorus does not have an offial status in Fiji.

Notes

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