| Occurrences: |
view occurrences
| id |
e324c5dd-a927-488f-9e85-3856bd3999f1
|
| scientificName |
Erinaceusyllis
|
| eventDate |
2022-10-03
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S74
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGCCTCCGGAGCTCGAGGTAATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGGGGTTAGAGGTGAAATTCTTGGATCCTCGCAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Erinaceusyllis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:195949",
"confidence": 0.95
},
{
"method": "VSEARCH",
"scientificName": "Erinaceusyllis_cryptica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:195952",
"accession": "JF913964.1.1274_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Erinaceusyllis_bidentata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:759888",
"accession": "JF903589.1.1800_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Erinaceusyllis_serratosetosa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:195954",
"accession": "JF903593.1.1807_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
253.0
|
| id |
62a4a16b-5428-44a1-8843-a7cc69d8f925
|
| scientificName |
Erinaceusyllis
|
| eventDate |
2022-10-03
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S75
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGCCTCCGGAGCTCGAGGTAATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGGGGTTAGAGGTGAAATTCTTGGATCCTCGCAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Erinaceusyllis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:195949",
"confidence": 0.95
},
{
"method": "VSEARCH",
"scientificName": "Erinaceusyllis_cryptica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:195952",
"accession": "JF913964.1.1274_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Erinaceusyllis_bidentata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:759888",
"accession": "JF903589.1.1800_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Erinaceusyllis_serratosetosa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:195954",
"accession": "JF903593.1.1807_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
7.0
|
| id |
c4633a6a-2326-462d-a6c8-b34b7873fd00
|
| scientificName |
Erinaceusyllis
|
| eventDate |
2022-10-03
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S79
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGCCTCCGGAGCTCGAGGTAATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGGGGTTAGAGGTGAAATTCTTGGATCCTCGCAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Erinaceusyllis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:195949",
"confidence": 0.95
},
{
"method": "VSEARCH",
"scientificName": "Erinaceusyllis_cryptica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:195952",
"accession": "JF913964.1.1274_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Erinaceusyllis_bidentata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:759888",
"accession": "JF903589.1.1800_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Erinaceusyllis_serratosetosa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:195954",
"accession": "JF903593.1.1807_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
| id |
fc2c4fda-1b70-4cd5-9e94-9515782c66cd
|
| scientificName |
Erinaceusyllis
|
| eventDate |
2022-10-03
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S78
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGCCTCCGGAGCTCGAGGTAATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGGGGTTAGAGGTGAAATTCTTGGATCCTCGCAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Erinaceusyllis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:195949",
"confidence": 0.95
},
{
"method": "VSEARCH",
"scientificName": "Erinaceusyllis_cryptica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:195952",
"accession": "JF913964.1.1274_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Erinaceusyllis_bidentata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:759888",
"accession": "JF903589.1.1800_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Erinaceusyllis_serratosetosa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:195954",
"accession": "JF903593.1.1807_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
|