| Occurrences: |
view occurrences
| id |
63087247-5a88-484f-b5b3-478d1b38ae58
|
| scientificName |
Branchiosyllis exilis
|
| AphiaID |
131279
|
| eventDate |
2024-02-28
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-197
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTCTTCGGAAGTCGAGATAATGATTAAGAGGGACAGACGGGGGCACTCGTACTGCGGCGTGAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Branchiosyllis exilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131279",
"confidence": 0.93
},
{
"method": "VSEARCH",
"scientificName": "Branchiosyllis_exilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131279",
"accession": "JF903584.1.1886_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Branchiosyllis_sp.",
"accession": "AF474283.1.1840_U",
"identity": 0.975,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
| id |
f95b095b-ef6b-47d9-a76c-e759ad7949d5
|
| scientificName |
Branchiosyllis exilis
|
| AphiaID |
131279
|
| eventDate |
2024-02-28
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-197
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGACGCCTTCACGTGGTCTCGCGGGCACAGGCCAAGTCCACCCGCGGTGCACTGCTGAGGGCTCCCCTCTGGCGGGGGGGTGCGCCCCTGTGCGTTGCCCTGCGAGAGCAGTCGCCGGTGCCCTTGACTGGGCCGCCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Branchiosyllis exilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131279",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Branchiosyllis_exilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131279",
"accession": "JF903584.1.1886_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|