| Occurrences: |
view occurrences
| id |
634b43bc-e745-4c2b-acb5-23a113440426
|
| scientificName |
Steromphala cineraria
|
| AphiaID |
1039839
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-67
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATCTCAGGGTCGTTCGCGTCGGTCCCTTGCTTCAATGGCTCGGGTACTGCGCGGTGTCGTCCCCCTTGCCAGACCTCTCAAAAAGGTTGCTCTTGACTGAGTGGCCTGCTCGAGTGGCTGGAGAGTTTACTTTGAAAAAATTAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Gibbula cineraria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141782",
"confidence": 0.98
},
{
"method": "VSEARCH",
"scientificName": "Calliostoma sakashitai",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467253",
"accession": "AB365306.1.1813_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Chaetoderma_nitidulum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139106",
"accession": "AY340425.1.1003_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Umbonium costatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:556961",
"accession": "AM048646.1.981_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Monilea lentiginosa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:718867",
"accession": "EU530085.1.979_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Eurytrochus cognatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1477122",
"accession": "EU530080.1.981_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
| id |
d1901ecc-8ad2-4d9e-b498-857802ad904c
|
| scientificName |
Steromphala cineraria
|
| AphiaID |
1039839
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-69
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATCTCAGGGTCGTTCGCGTCGGTCCCTTGCTTCAATGGCTCGGGTACTGCGCGGTGTCGTCCCCCTTGCCAGACCTCTCAAAAAGGTTGCTCTTGACTGAGTGGCCTGCTCGAGTGGCTGGAGAGTTTACTTTGAAAAAATTAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Gibbula cineraria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141782",
"confidence": 0.98
},
{
"method": "VSEARCH",
"scientificName": "Calliostoma sakashitai",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467253",
"accession": "AB365306.1.1813_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Chaetoderma_nitidulum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139106",
"accession": "AY340425.1.1003_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Umbonium costatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:556961",
"accession": "AM048646.1.981_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Monilea lentiginosa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:718867",
"accession": "EU530085.1.979_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Eurytrochus cognatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1477122",
"accession": "EU530080.1.981_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
| id |
d32e3992-6159-4e6b-b746-e2ec67e9f1a0
|
| scientificName |
Steromphala cineraria
|
| AphiaID |
1039839
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-68
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATCTCAGGGTCGTTCGCGTCGGTCCCTTGCTTCAATGGCTCGGGTACTGCGCGGTGTCGTCCCCCTTGCCAGACCTCTCAAAAAGGTTGCTCTTGACTGAGTGGCCTGCTCGAGTGGCTGGAGAGTTTACTTTGAAAAAATTAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Gibbula cineraria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141782",
"confidence": 0.98
},
{
"method": "VSEARCH",
"scientificName": "Calliostoma sakashitai",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467253",
"accession": "AB365306.1.1813_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Chaetoderma_nitidulum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139106",
"accession": "AY340425.1.1003_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Umbonium costatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:556961",
"accession": "AM048646.1.981_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Monilea lentiginosa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:718867",
"accession": "EU530085.1.979_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Eurytrochus cognatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1477122",
"accession": "EU530080.1.981_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|