PacMAN decision support system

Potential detection of Leptocylindrus danicus in Fiji

Description:

Potential detection of Leptocylindrus danicus with confidence low on 2022-06-20 in material sample S41, marker 18S

Confidence:

low

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Leptocylindrus danicus
Heterokontophyta > Bacillariophyceae > Leptocylindrales > Leptocylindraceae
WoRMS: 149106

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

2.0

Names:

Occurrences:

view occurrences

id	6be0b16a-0e9d-4bcb-b92f-d66ef3656dd0
scientificName	Leptocylindrus
eventDate	2022-06-20
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S41
target_gene	18S
DNA_sequence	TGTTGGTTTGTGTACGGAAATAATGATTAACAGGAACAGTGTTGTGGGTATTCGTATTTCGTTGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACGACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Leptocylindrus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149038", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "JF305280.1.910_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "JF305373.1.930_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus danicus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149106", "accession": "AJ535175.1.1805_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "GU823199.1.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus aporus", "accession": "KC814810.1.1751_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	2.0

id	8e090342-7418-4da4-812f-997eca6b33d1
scientificName	Leptocylindrus
eventDate	2022-06-20
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S41
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGTGCATTCCACTGGCCTATTGGTTAACTCCAACTTGGCTCATTTGGAATACGCCATCTTTAGGCAGACCCGTCGTGGCATTAGGTTGTCGTGATGGTTACGCCTATCGTTTACTGTGAAGAAATTAGGGTGTTCAAA
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Leptocylindrus sp.", "confidence": 0.83 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "HQ394112.1.841_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "HQ394099.1.841_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus danicus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149106", "accession": "AJ535175.1.1805_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus aporus", "accession": "KC814810.1.1751_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "GU823199.1.1210_U", "identity": 0.985, "query_cover": 0.9952 } ] }
organismQuantity	2.0

id	64ed04c2-9857-4624-a041-5a9fcd483f62
scientificName	Leptocylindrus
eventDate	2022-06-20
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S35
target_gene	18S
DNA_sequence	TGTTGGTTTGTGTACGGAAATAATGATTAACAGGAACAGTGTTGTGGGTATTCGTATTTCGTTGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACGACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Leptocylindrus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149038", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "JF305280.1.910_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "JF305373.1.930_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus danicus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149106", "accession": "AJ535175.1.1805_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "GU823199.1.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus aporus", "accession": "KC814810.1.1751_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	1.0

id	7370d464-5ffb-48d5-b5a5-6bdfaf9e3b6c
scientificName	Leptocylindrus
eventDate	2022-06-20
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S40
target_gene	18S
DNA_sequence	TGTTGGTTTGTGTACGGAAATAATGATTAACAGGAACAGTGTTGTGGGTATTCGTATTTCGTTGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACGACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Leptocylindrus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149038", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "JF305280.1.910_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "JF305373.1.930_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus danicus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149106", "accession": "AJ535175.1.1805_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "GU823199.1.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus aporus", "accession": "KC814810.1.1751_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	1.0

id	7495ba68-d53e-4c75-ac21-a3065dbac3c7
scientificName	Leptocylindrus
eventDate	2022-06-20
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S40
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGTGCATTCCACTGGCCTATTGGTTAACTCCAACTTGGCTCATTTGGAATACGCCATCTTTAGGCAGACCCGTCGTGGCATTAGGTTGTCGTGATGGTTACGCCTATCGTTTACTGTGAAGAAATTAGGGTGTTCAAA
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Leptocylindrus sp.", "confidence": 0.83 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "HQ394112.1.841_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "HQ394099.1.841_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus danicus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149106", "accession": "AJ535175.1.1805_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus aporus", "accession": "KC814810.1.1751_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "GU823199.1.1210_U", "identity": 0.985, "query_cover": 0.9952 } ] }
organismQuantity	1.0

id	926d6f0d-7a0a-4621-9b3f-bbece9657960
scientificName	Leptocylindrus
eventDate	2022-06-20
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S35
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGTGCATTCCACTGGCCTATTGGTTAACTCCAACTTGGCTCATTTGGAATACGCCATCTTTAGGCAGACCCGTCGTGGCATTAGGTTGTCGTGATGGTTACGCCTATCGTTTACTGTGAAGAAATTAGGGTGTTCAAA
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Leptocylindrus sp.", "confidence": 0.83 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "HQ394112.1.841_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "HQ394099.1.841_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus danicus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149106", "accession": "AJ535175.1.1805_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus aporus", "accession": "KC814810.1.1751_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "GU823199.1.1210_U", "identity": 0.985, "query_cover": 0.9952 } ] }
organismQuantity	1.0

Leptocylindrus danicus in Fiji

Status

Leptocylindrus danicus does not have an offial status in Fiji.

Notes

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