| Occurrences: |
view occurrences
| id |
66a44448-7032-4283-aa05-3c6535d363e4
|
| scientificName |
Amphibalanus variegatus
|
| AphiaID |
467513
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S163
|
| target_gene |
COI
|
| DNA_sequence |
TTTATCTAGAAATATTGCTCATTCTGGAGCTTCTGTAGATTTATCTATTTTCTCTTTACATTTAGCAGGAGCTTCCTCAATTTTAGGAGCTATTAATTTTATATCAACTGTAATTAATATACGAGCTGAAACCTTAACATTTGATCGACTACCTTTATTTGTATGAAGTGTATTTATTACTGTAATTTTATTATTATTATCCTTACCAGTTTTAGCAGGAGCTATTACTATACTCCTTACAGATCGAAATTTAAATACATCATTTTTTGATCCAACAGGGGGAGGGGATCCTATCTTATACCAACATTTATTT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Amphibalanus variegatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467513",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Amphibalanus variegatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467513",
"accession": "MK995342",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Amphibalanus variegatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467513",
"accession": "MK995343",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Amphibalanus variegatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467513",
"accession": "MK995345",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Amphibalanus variegatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467513",
"accession": "MW196407",
"identity": 0.997,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Amphibalanus variegatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467513",
"accession": "MW196408",
"identity": 0.997,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
44.0
|
| id |
6bc9f885-15f9-48ea-8a00-278ee8af32f8
|
| scientificName |
Amphibalanus variegatus
|
| AphiaID |
467513
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S173
|
| target_gene |
COI
|
| DNA_sequence |
TTTATCTAGAAATATTGCTCATTCTGGAGCTTCTGTAGATTTATCTATTTTCTCTTTACATTTAGCAGGAGCTTCCTCAATTTTAGGAGCTATTAATTTTATATCAACTGTAATTAATATACGAGCTGAAACCTTAACATTTGATCGACTACCTTTATTTGTATGAAGTGTATTTATTACTGTAATTTTATTATTATTATCCTTACCAGTTTTAGCAGGAGCTATTACTATACTCCTTACAGATCGAAATTTAAATACATCATTTTTTGATCCAACAGGGGGAGGGGATCCTATCTTATACCAACATTTATTT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Amphibalanus variegatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467513",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Amphibalanus variegatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467513",
"accession": "MK995342",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Amphibalanus variegatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467513",
"accession": "MK995343",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Amphibalanus variegatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467513",
"accession": "MK995345",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Amphibalanus variegatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467513",
"accession": "MW196407",
"identity": 0.997,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Amphibalanus variegatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467513",
"accession": "MW196408",
"identity": 0.997,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
4.0
|
|