| Occurrences: |
view occurrences
| id |
67a55fa3-db76-43d7-a755-7ea2622a5f41
|
| scientificName |
Pyura herdmani
|
| AphiaID |
251268
|
| eventDate |
2023-05-31
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-27
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAGCACGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pyura herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Pyura_sp.",
"accession": "JF961822.1.1702_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"accession": "JF961805.1.1702_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_praeputialis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251292",
"accession": "JF961807.1.1702_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"accession": "JF961796.1.1702_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"accession": "JF961801.1.1702_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
18.0
|
| id |
a920898e-2bba-4198-a57b-2a1819bf2c75
|
| scientificName |
Pyura herdmani
|
| AphiaID |
251268
|
| eventDate |
2023-05-31
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-28
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAGCACGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pyura herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Pyura_sp.",
"accession": "JF961822.1.1702_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"accession": "JF961805.1.1702_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_praeputialis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251292",
"accession": "JF961807.1.1702_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"accession": "JF961796.1.1702_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"accession": "JF961801.1.1702_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
17.0
|
| id |
aad001cd-44a7-4d03-9837-cbdab5f25876
|
| scientificName |
Pyura herdmani
|
| AphiaID |
251268
|
| eventDate |
2023-05-31
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-26
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAGCACGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pyura herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Pyura_sp.",
"accession": "JF961822.1.1702_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"accession": "JF961805.1.1702_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_praeputialis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251292",
"accession": "JF961807.1.1702_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"accession": "JF961796.1.1702_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"accession": "JF961801.1.1702_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
14.0
|
| id |
d0fce873-f93a-4fb2-ae9b-24d2614bbc0f
|
| scientificName |
Pyura
|
| eventDate |
2023-05-31
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-28
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAGCACGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGCTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pyura",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103524",
"confidence": 0.96
},
{
"method": "VSEARCH",
"scientificName": "Pyura_sp.",
"accession": "JF961822.1.1702_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"accession": "JF961805.1.1702_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_praeputialis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251292",
"accession": "JF961807.1.1702_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"accession": "JF961796.1.1702_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"accession": "JF961801.1.1702_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
3.0
|
| id |
c7cc2e92-3d84-45cd-9e58-d334a27a7f0c
|
| scientificName |
Pyura
|
| eventDate |
2023-05-31
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-27
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAGCACGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGCTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pyura",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103524",
"confidence": 0.96
},
{
"method": "VSEARCH",
"scientificName": "Pyura_sp.",
"accession": "JF961822.1.1702_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"accession": "JF961805.1.1702_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_praeputialis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251292",
"accession": "JF961807.1.1702_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"accession": "JF961796.1.1702_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"accession": "JF961801.1.1702_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
|