| Occurrences: |
view occurrences
| id |
6b9a65dd-7156-411c-9674-5c77df2f1bb0
|
| scientificName |
Plotosus lineatus
|
| AphiaID |
217659
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S160
|
| target_gene |
COI
|
| DNA_sequence |
TCTCGCTGGTAATATTGCACACGCGGGTGCTTCTGTAGACTTAACTATCTTCTCCCTACACCTCGCCGGAGTGTCATCTATCTTGGGCGCCATCAACTTCATCACAACTATTATTAACATAAAACCCCCAGCCATTTCCCAGTATCAAATGCCTCTATTCGTTTGATCTGTACTAATCACAGCCGTCCTCCTCCTTTTATCACTACCAGTATTGGCCGCTGGCATCACAATACTACTAACAGACCGAAACTTAAATACAACATTCTTCGACCCCGCGGGCGGGGGCGACCCCATCCTTTATCAACATCTTTTC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Plotosus lineatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:217659",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Plotosus lineatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:217659",
"accession": "EU595234",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Plotosus lineatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:217659",
"accession": "EU595235",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Plotosus lineatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:217659",
"accession": "EU595236",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Plotosus lineatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:217659",
"accession": "EU595237",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Plotosus lineatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:217659",
"accession": "EU595238",
"identity": 1,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
3.0
|
| id |
cc902c3f-9aa1-4877-8cbe-adaf47eeccef
|
| scientificName |
Plotosus lineatus
|
| AphiaID |
217659
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S161
|
| target_gene |
COI
|
| DNA_sequence |
TCTCGCTGGTAATATTGCACACGCGGGTGCTTCTGTAGACTTAACTATCTTCTCCCTACACCTCGCCGGAGTGTCATCTATCTTGGGCGCCATCAACTTCATCACAACTATTATTAACATAAAACCCCCAGCCATTTCCCAGTATCAAATGCCTCTATTCGTTTGATCTGTACTAATCACAGCCGTCCTCCTCCTTTTATCACTACCAGTATTGGCCGCTGGCATCACAATACTACTAACAGACCGAAACTTAAATACAACATTCTTCGACCCCGCGGGCGGGGGCGACCCCATCCTTTATCAACATCTTTTC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Plotosus lineatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:217659",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Plotosus lineatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:217659",
"accession": "EU595234",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Plotosus lineatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:217659",
"accession": "EU595235",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Plotosus lineatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:217659",
"accession": "EU595236",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Plotosus lineatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:217659",
"accession": "EU595237",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Plotosus lineatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:217659",
"accession": "EU595238",
"identity": 1,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
2.0
|
|