| Occurrences: |
view occurrences
| id |
6c519717-4b42-418d-b56a-9e250ff132bf
|
| scientificName |
Patelloida pygmaea
|
| AphiaID |
456638
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S41
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCCTATATCGGAGTTGCTGCGGTTAAAAAGCTCGTCGTTGGATCTCGGAGGCGGCACGGTCGGGCGCGATACGCTGCGGGTCCGACCGGCGATTTCTCGGCCGTCCCTAACCGGCGCGCGGGGCGAGGAGGACTTCGCGGTCCTTCCTCGTTTTTCTTCTTCTTAGGGAGAAAACCCGCCGCATT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Patelloida pygmaea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:456638",
"confidence": 0.92
},
{
"method": "VSEARCH",
"scientificName": "Patelloida pygmaea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:456638",
"accession": "AB282765.1.1024_U",
"identity": 0.986,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Lepeta caeca_pacifica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:456693",
"accession": "AB282759.1.1031_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
16.0
|
| id |
dc80bb85-c3f8-431d-a473-b98c7d415fa8
|
| scientificName |
Patelloida pygmaea
|
| AphiaID |
456638
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S40
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCCTATATCGGAGTTGCTGCGGTTAAAAAGCTCGTCGTTGGATCTCGGAGGCGGCACGGTCGGGCGCGATACGCTGCGGGTCCGACCGGCGATTTCTCGGCCGTCCCTAACCGGCGCGCGGGGCGAGGAGGACTTCGCGGTCCTTCCTCGTTTTTCTTCTTCTTAGGGAGAAAACCCGCCGCATT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Patelloida pygmaea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:456638",
"confidence": 0.92
},
{
"method": "VSEARCH",
"scientificName": "Patelloida pygmaea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:456638",
"accession": "AB282765.1.1024_U",
"identity": 0.986,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Lepeta caeca_pacifica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:456693",
"accession": "AB282759.1.1031_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
16.0
|
| id |
9161d485-c7cc-4355-a6d3-5b1f6c9dd54b
|
| scientificName |
Patelloida pygmaea
|
| AphiaID |
456638
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S35
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCCTATATCGGAGTTGCTGCGGTTAAAAAGCTCGTCGTTGGATCTCGGAGGCGGCACGGTCGGGCGCGATACGCTGCGGGTCCGACCGGCGATTTCTCGGCCGTCCCTAACCGGCGCGCGGGGCGAGGAGGACTTCGCGGTCCTTCCTCGTTTTTCTTCTTCTTAGGGAGAAAACCCGCCGCATT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Patelloida pygmaea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:456638",
"confidence": 0.92
},
{
"method": "VSEARCH",
"scientificName": "Patelloida pygmaea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:456638",
"accession": "AB282765.1.1024_U",
"identity": 0.986,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Lepeta caeca_pacifica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:456693",
"accession": "AB282759.1.1031_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
10.0
|
|