| Occurrences: |
view occurrences
| id |
6cbcf6e7-0c93-44a3-b2e2-3e685c2e9e30
|
| scientificName |
Glycera capitata
|
| AphiaID |
130118
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-45
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTCCCGGCCTGCGGTTCACCACACGGTGTCTACTGCCCGTCCGGACCTACCTGCCGGTTTTCCCCTGGTTCTCTTCGTTGAGTGCCTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Glycera capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Glycera_lapidum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130123",
"accession": "GQ426560.1.1734_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"accession": "GQ426558.1.1168_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"accession": "GQ426557.1.1676_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"accession": "GQ426556.1.1693_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_onomichiensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328135",
"accession": "AY884163.1.1610_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
97.0
|
| id |
94fe04f8-cafa-4a69-8fce-bef5878e2261
|
| scientificName |
Glycera capitata
|
| AphiaID |
130118
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-34
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTCCCGGCCTGCGGTTCACCACACGGTGTCTACTGCCCGTCCGGACCTACCTGCCGGTTTTCCCCTGGTTCTCTTCGTTGAGTGCCTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Glycera capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Glycera_lapidum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130123",
"accession": "GQ426560.1.1734_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"accession": "GQ426558.1.1168_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"accession": "GQ426557.1.1676_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"accession": "GQ426556.1.1693_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_onomichiensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328135",
"accession": "AY884163.1.1610_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
4.0
|
| id |
9f8f5331-2bf8-4f47-9ac9-84fb1542cd41
|
| scientificName |
Glycera capitata
|
| AphiaID |
130118
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-33
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTCCCGGCCTGCGGTTCACCACACGGTGTCTACTGCCCGTCCGGACCTACCTGCCGGTTTTCCCCTGGTTCTCTTCGTTGAGTGCCTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Glycera capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Glycera_lapidum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130123",
"accession": "GQ426560.1.1734_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"accession": "GQ426558.1.1168_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"accession": "GQ426557.1.1676_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"accession": "GQ426556.1.1693_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_onomichiensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328135",
"accession": "AY884163.1.1610_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|