| Occurrences: |
view occurrences
| id |
914fa75b-38c6-4c8e-80e1-dd0b8c7c03eb
|
| scientificName |
Bugula neritina
|
| AphiaID |
111158
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S160
|
| target_gene |
COI
|
| DNA_sequence |
TTATCATCGGGCTTAGGTCACAGAGGAGCAGCTGTGGATTTAGCCATTTTCTCTTTACACCTTGCCGGTGTATCCTCAATTTTAGGAGCAATTAACTTTATTACTACAACAATTAATATACGAAGAAACTCTATAAAAATAATTCAAATCCCTTTATTTATTTGGGCAGTTTTTATTACAGCCATTTTGTTACTTTTATCTTTACCAGTGCTAGCTGGAGCTATTACTATACTACTAACCGATCGTAATGTTAATACATCTTTTTTTGACCCTGCTGGAGGGGGGGATCCTATTTTATACCAACACTTATTT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129735",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129736",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129737",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129738",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129739",
"identity": 1,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
5.0
|
| id |
6d1305d1-9095-4e0e-bc5c-6a6fdcf39e83
|
| scientificName |
Bugula neritina
|
| AphiaID |
111158
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S161
|
| target_gene |
COI
|
| DNA_sequence |
TTATCATCGGGCTTAGGTCACAGAGGAGCAGCTGTGGATTTAGCCATTTTCTCTTTACACCTTGCCGGTGTATCCTCAATTTTAGGAGCAATTAACTTTATTACTACAACAATTAATATACGAAGAAACTCTATAAAAATAATTCAAATCCCTTTATTTATTTGGGCAGTTTTTATTACAGCCATTTTGTTACTTTTATCTTTACCAGTGCTAGCTGGAGCTATTACTATACTACTAACCGATCGTAATGTTAATACATCTTTTTTTGACCCTGCTGGAGGGGGGGATCCTATTTTATACCAACACTTATTT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129735",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129736",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129737",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129738",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129739",
"identity": 1,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
3.0
|
|