PacMAN decision support system

Potential detection of Rastrelliger kanagurta in Fiji

Description:

Potential detection of Rastrelliger kanagurta with confidence medium on 2023-05-31 in material sample USP-24-01-123, marker COI

Confidence:

medium

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Rastrelliger kanagurta
Chordata > Teleostei > Scombriformes > Scombridae
WoRMS: 127020

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

15.0

Names:

Occurrences:

view occurrences

id	9b7c70bc-9a4b-43c7-bcb0-bcb18cd5ea18
scientificName	Rastrelliger kanagurta
AphiaID	127020
eventDate	2023-05-31
decimalLongitude	178.4255
decimalLatitude	-18.13163
eventID	SUVA1_20230531_WB
materialSampleID	USP-24-01-123
target_gene	COI
DNA_sequence	TCTGGCCAGCAACTTAGCCCATGCCGGAGCGTCTGTCGATCTTACCATCTTCTCCCTTCACTTAGCAGGTGTTTCCTCTATTCTTGGTGCTATCAACTTCATCACCACAATTATTAACATGAAACCTGCAGCCACATCCCAGTATCAGACACCCCTGTTCGTCTGAGCAGTCCTAATTACAGCCGTTCTTCTGCTCCTGTCACTCCCAGTCCTTGCTGCTGGGATCACAATGCTCCTAACGGACCGAAATCTTAACACTACATTCTTTGACCCCGCAGGAGGGGGAGACCCGATCCTCTACCAGCACCTATTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Rastrelliger kanagurta", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127020", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Rastrelliger faughni", "scientificNameID": "urn:lsid:marinespecies.org:taxname:273808", "accession": "FJ531533", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Rastrelliger kanagurta", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127020", "accession": "EF609589", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Rastrelliger kanagurta", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127020", "accession": "FJ531534", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Rastrelliger kanagurta", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127020", "accession": "JN653482", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Rastrelliger kanagurta", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127020", "accession": "JN653484", "identity": 1, "query_cover": 0.9968 } ] }
organismQuantity	15.0

id	6f3864a5-72f7-458b-83d4-afcd0a5e5324
scientificName	Rastrelliger kanagurta
AphiaID	127020
eventDate	2023-05-31
decimalLongitude	178.4255
decimalLatitude	-18.13163
eventID	SUVA1_20230531_WB
materialSampleID	USP-24-01-123
target_gene	COI
DNA_sequence	TCTGGCCAGCAACTTAGCCCATGCCGGAGCGTCTGTTGATCTAACCATCTTCTCCCTTCACTTAGCAGGTGTTTCCTCTATTCTTGGTGCTATTAACTTTATCACCACAATTATTAACATGAAACCTGCAGCCACATCCCAGTATCAGACACCCCTGTTCGTCTGAGCAGTCCTAATTACAGCTGTTCTTCTGCTCCTGTCACTCCCAGTCCTTGCTGCTGGGATCACAATGCTCCTAACGGACCGAAATCTTAACACTACATTCTTTGACCCCGCAGGAGGAGGAGACCCAATCCTCTACCAGCACCTATTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Rastrelliger kanagurta", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127020", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Rastrelliger kanagurta", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127020", "accession": "JN653483", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Rastrelliger kanagurta", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127020", "accession": "LC503051", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Rastrelliger kanagurta", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127020", "accession": "LC503063", "identity": 0.997, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Rastrelliger kanagurta", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127020", "accession": "LC503083", "identity": 0.997, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Rastrelliger kanagurta", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127020", "accession": "JN653485", "identity": 0.994, "query_cover": 0.9968 } ] }
organismQuantity	11.0

id	77a6a40a-6dff-400c-b912-c9b036067248
scientificName	Rastrelliger kanagurta
AphiaID	127020
eventDate	2023-05-31
decimalLongitude	178.4255
decimalLatitude	-18.13163
eventID	SUVA1_20230531_WC
materialSampleID	USP-24-01-124
target_gene	COI
DNA_sequence	TCTGGCCAGCAACTTAGCCCATGCCGGAGCGTCTGTCGATCTTACCATCTTCTCCCTTCACTTAGCAGGTGTTTCCTCTATTCTTGGTGCTATCAACTTCATCACCACAATTATTAACATGAAACCTGCAGCCACATCCCAGTATCAGACACCCCTGTTCGTCTGAGCAGTCCTAATTACAGCCGTTCTTCTGCTCCTGTCACTCCCAGTCCTTGCTGCTGGGATCACAATGCTCCTAACGGACCGAAATCTTAACACTACATTCTTTGACCCCGCAGGAGGGGGAGACCCGATCCTCTACCAGCACCTATTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Rastrelliger kanagurta", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127020", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Rastrelliger faughni", "scientificNameID": "urn:lsid:marinespecies.org:taxname:273808", "accession": "FJ531533", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Rastrelliger kanagurta", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127020", "accession": "EF609589", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Rastrelliger kanagurta", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127020", "accession": "FJ531534", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Rastrelliger kanagurta", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127020", "accession": "JN653482", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Rastrelliger kanagurta", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127020", "accession": "JN653484", "identity": 1, "query_cover": 0.9968 } ] }
organismQuantity	5.0

id	c07629f0-ee70-4bb1-8f2b-95f4277a12c4
scientificName	Rastrelliger kanagurta
AphiaID	127020
eventDate	2023-05-31
decimalLongitude	178.4255
decimalLatitude	-18.13163
eventID	SUVA1_20230531_WA
materialSampleID	USP-24-01-122
target_gene	COI
DNA_sequence	TCTGGCCAGCAACTTAGCCCATGCCGGAGCGTCTGTTGATCTAACCATCTTCTCCCTTCACTTAGCAGGTGTTTCCTCTATTCTTGGTGCTATTAACTTTATCACCACAATTATTAACATGAAACCTGCAGCCACATCCCAGTATCAGACACCCCTGTTCGTCTGAGCAGTCCTAATTACAGCTGTTCTTCTGCTCCTGTCACTCCCAGTCCTTGCTGCTGGGATCACAATGCTCCTAACGGACCGAAATCTTAACACTACATTCTTTGACCCCGCAGGAGGAGGAGACCCAATCCTCTACCAGCACCTATTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Rastrelliger kanagurta", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127020", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Rastrelliger kanagurta", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127020", "accession": "JN653483", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Rastrelliger kanagurta", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127020", "accession": "LC503051", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Rastrelliger kanagurta", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127020", "accession": "LC503063", "identity": 0.997, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Rastrelliger kanagurta", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127020", "accession": "LC503083", "identity": 0.997, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Rastrelliger kanagurta", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127020", "accession": "JN653485", "identity": 0.994, "query_cover": 0.9968 } ] }
organismQuantity	1.0

id	fecc08f0-4622-4141-b6e0-33a13ae6f164
scientificName	Rastrelliger kanagurta
AphiaID	127020
eventDate	2023-05-31
decimalLongitude	178.4255
decimalLatitude	-18.13163
eventID	SUVA1_20230531_WC
materialSampleID	USP-24-01-124
target_gene	COI
DNA_sequence	TCTGGCCAGCAACTTAGCCCATGCCGGAGCGTCTGTTGATCTAACCATCTTCTCCCTTCACTTAGCAGGTGTTTCCTCTATTCTTGGTGCTATTAACTTTATCACCACAATTATTAACATGAAACCTGCAGCCACATCCCAGTATCAGACACCCCTGTTCGTCTGAGCAGTCCTAATTACAGCTGTTCTTCTGCTCCTGTCACTCCCAGTCCTTGCTGCTGGGATCACAATGCTCCTAACGGACCGAAATCTTAACACTACATTCTTTGACCCCGCAGGAGGAGGAGACCCAATCCTCTACCAGCACCTATTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Rastrelliger kanagurta", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127020", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Rastrelliger kanagurta", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127020", "accession": "JN653483", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Rastrelliger kanagurta", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127020", "accession": "LC503051", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Rastrelliger kanagurta", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127020", "accession": "LC503063", "identity": 0.997, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Rastrelliger kanagurta", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127020", "accession": "LC503083", "identity": 0.997, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Rastrelliger kanagurta", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127020", "accession": "JN653485", "identity": 0.994, "query_cover": 0.9968 } ] }
organismQuantity	1.0

Rastrelliger kanagurta in Fiji

Status

Rastrelliger kanagurta does not have an offial status in Fiji.

Notes

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