| Occurrences: |
view occurrences
| id |
6f7d5ce2-9d2c-45b6-9249-45afc9593367
|
| scientificName |
Pseliodinium fusus
|
| AphiaID |
1474876
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-68
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTCTGCCGAGGATGACCGGTCCGCCCTCTGGGTGAGTATCTGGCTCAGCCTGGGCATCCTCTTGGGGAACGTAGCTGCACTTGACTGTGTGGTGCGGTATCCAGGACTTTTACTTTGAGGAAATTAGAGTGTTTCAAGCAGG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ceratoperidinium falcatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:839164",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Dinophyceae_XXX_sp.",
"accession": "AY664890.1.1755_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ceratoperidinium falcatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:839164",
"accession": "KP790150.1.1330_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ceratoperidinium falcatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:839164",
"accession": "KP790151.1.1330_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Torquentidium convolutum",
"accession": "MF948385.1.1719_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Dinophyceae_XXX_sp.",
"accession": "AY664946.1.1755_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
6.0
|
| id |
f264c4a5-f182-4672-bada-5a1219baa626
|
| scientificName |
Pseliodinium fusus
|
| AphiaID |
1474876
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-67
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTCTGCCGAGGATGACCGGTCCGCCCTCTGGGTGAGTATCTGGCTCAGCCTGGGCATCCTCTTGGGGAACGTAGCTGCACTTGACTGTGTGGTGCGGTATCCAGGACTTTTACTTTGAGGAAATTAGAGTGTTTCAAGCAGG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ceratoperidinium falcatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:839164",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Dinophyceae_XXX_sp.",
"accession": "AY664890.1.1755_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ceratoperidinium falcatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:839164",
"accession": "KP790150.1.1330_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ceratoperidinium falcatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:839164",
"accession": "KP790151.1.1330_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Torquentidium convolutum",
"accession": "MF948385.1.1719_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Dinophyceae_XXX_sp.",
"accession": "AY664946.1.1755_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
4.0
|
| id |
b5ed558b-6b7d-4efb-ab3b-5cc6ec93e53a
|
| scientificName |
Pseliodinium fusus
|
| AphiaID |
1474876
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-69
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTCTGCCGAGGATGACCGGTCCGCCCTCTGGGTGAGTATCTGGCTCAGCCTGGGCATCCTCTTGGGGAACGTAGCTGCACTTGACTGTGTGGTGCGGTATCCAGGACTTTTACTTTGAGGAAATTAGAGTGTTTCAAGCAGG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ceratoperidinium falcatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:839164",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Dinophyceae_XXX_sp.",
"accession": "AY664890.1.1755_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ceratoperidinium falcatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:839164",
"accession": "KP790150.1.1330_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ceratoperidinium falcatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:839164",
"accession": "KP790151.1.1330_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Torquentidium convolutum",
"accession": "MF948385.1.1719_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Dinophyceae_XXX_sp.",
"accession": "AY664946.1.1755_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
2.0
|
|