| Occurrences: |
view occurrences
| id |
d35b069b-b64a-4a18-b6b0-6e461e561d42
|
| scientificName |
Syllis gracilis
|
| AphiaID |
131435
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-68
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAACTCGAGATAATGATTAAGAGGGACAGACGGGGGCATCCGTACTGCGGCGTTAGAGGTGAAATTCTTGGATCGCCGCAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Syllis gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Syllis_gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"accession": "EF123876.1.1851_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Typosyllis_armillaris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156681",
"accession": "AF474292.1.1823_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Syllis_ypsiloides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:762353",
"accession": "JF903673.1.1895_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Syllis_gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"accession": "JF903660.1.1868_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Sphaerosyllis_bardukaciculata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:389241",
"accession": "EF123842.1.1775_U",
"identity": 0.975,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
3.0
|
| id |
fd44d609-d4c3-4824-b45c-a3785238b278
|
| scientificName |
Syllis gracilis
|
| AphiaID |
131435
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-73
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAACTCGAGATAATGATTAAGAGGGACAGACGGGGGCATCCGTACTGCGGCGTTAGAGGTGAAATTCTTGGATCGCCGCAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Syllis gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Syllis_gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"accession": "EF123876.1.1851_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Typosyllis_armillaris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156681",
"accession": "AF474292.1.1823_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Syllis_ypsiloides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:762353",
"accession": "JF903673.1.1895_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Syllis_gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"accession": "JF903660.1.1868_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Sphaerosyllis_bardukaciculata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:389241",
"accession": "EF123842.1.1775_U",
"identity": 0.975,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
2.0
|
| id |
6fd1564e-0408-4eb8-9366-d114c9447c6a
|
| scientificName |
Syllis gracilis
|
| AphiaID |
131435
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-78
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAACTCGAGATAATGATTAAGAGGGACAGACGGGGGCATCCGTACTGCGGCGTTAGAGGTGAAATTCTTGGATCGCCGCAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Syllis gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Syllis_gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"accession": "EF123876.1.1851_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Typosyllis_armillaris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156681",
"accession": "AF474292.1.1823_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Syllis_ypsiloides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:762353",
"accession": "JF903673.1.1895_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Syllis_gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"accession": "JF903660.1.1868_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Sphaerosyllis_bardukaciculata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:389241",
"accession": "EF123842.1.1775_U",
"identity": 0.975,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
| id |
c89d809d-18c1-4cd9-a0ac-a6e0e7be3d48
|
| scientificName |
Syllis gracilis
|
| AphiaID |
131435
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-74
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAACTCGAGATAATGATTAAGAGGGACAGACGGGGGCATCCGTACTGCGGCGTTAGAGGTGAAATTCTTGGATCGCCGCAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Syllis gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Syllis_gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"accession": "EF123876.1.1851_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Typosyllis_armillaris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156681",
"accession": "AF474292.1.1823_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Syllis_ypsiloides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:762353",
"accession": "JF903673.1.1895_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Syllis_gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"accession": "JF903660.1.1868_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Sphaerosyllis_bardukaciculata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:389241",
"accession": "EF123842.1.1775_U",
"identity": 0.975,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
|