| Occurrences: |
view occurrences
| id |
7b080341-5edb-4c72-af2d-755f929b76a6
|
| scientificName |
Portunus sanguinolentus
|
| AphiaID |
1061758
|
| eventDate |
2021-12-07
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S118
|
| target_gene |
COI
|
| DNA_sequence |
TCTTGCTGCCGCTATTGCCCACGCTGGAGCTTCAGTCGATTTGGGGATTTTCTCCCTGCATTTAGCTGGTGTATCCTCCATTCTAGGTGCCGTAAACTTTATAACTACTGTAATTAACATACGATCCTTCGGCATAAGAATGGACCAGATACCGTTATTTGTGTGATCAGTCTTCATTACCGCTATTCTGCTCCTTCTCTCCCTACCTGTTCTTGCAGGAGCTATTACTATGCTCTTAACAGATCGTAACCTCAACACCTCCTTCTTTGATCCTGCAGGTGGTGGAGACCCTGTTTTATATCAACACTTATTC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Portunus sanguinolentus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1061758",
"confidence": 0.98
},
{
"method": "VSEARCH",
"scientificName": "Portunus sanguinolentus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1061758",
"accession": "MF974233",
"identity": 0.99,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Portunus sanguinolentus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1061758",
"accession": "MF974234",
"identity": 0.99,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Portunus sanguinolentus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1061758",
"accession": "MF974235",
"identity": 0.99,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Portunus sanguinolentus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1061758",
"accession": "MK091819",
"identity": 0.99,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Portunus sanguinolentus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1061758",
"accession": "MK091821",
"identity": 0.99,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
1456.0
|
| id |
70ff1d81-f2e2-4337-bf3d-c405dee3fa46
|
| scientificName |
Portunus sanguinolentus
|
| AphiaID |
1061758
|
| eventDate |
2021-12-07
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S120
|
| target_gene |
COI
|
| DNA_sequence |
TCTTGCTGCCGCTATTGCCCACGCTGGAGCTTCAGTCGATTTGGGGATTTTCTCCCTGCATTTAGCTGGTGTATCCTCCATTCTAGGTGCCGTAAACTTTATAACTACTGTAATTAACATACGATCCTTCGGCATAAGAATGGACCAGATACCGTTATTTGTGTGATCAGTCTTCATTACCGCTATTCTGCTCCTTCTCTCCCTACCTGTTCTTGCAGGAGCTATTACTATGCTCTTAACAGATCGTAACCTCAACACCTCCTTCTTTGATCCTGCAGGTGGTGGAGACCCTGTTTTATATCAACACTTATTC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Portunus sanguinolentus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1061758",
"confidence": 0.98
},
{
"method": "VSEARCH",
"scientificName": "Portunus sanguinolentus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1061758",
"accession": "MF974233",
"identity": 0.99,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Portunus sanguinolentus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1061758",
"accession": "MF974234",
"identity": 0.99,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Portunus sanguinolentus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1061758",
"accession": "MF974235",
"identity": 0.99,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Portunus sanguinolentus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1061758",
"accession": "MK091819",
"identity": 0.99,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Portunus sanguinolentus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1061758",
"accession": "MK091821",
"identity": 0.99,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
48.0
|
|