| Occurrences: |
view occurrences
| id |
8ab3154a-0392-4a7d-b238-e340a52864a5
|
| scientificName |
Ruditapes philippinarum
|
| AphiaID |
231750
|
| eventDate |
2022-05-25
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S46
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTGCAGGCTTGCGGTCCGTCTCGCGGCGGTCACTGCTCGTCCTGGCCTCCACGCCGGCGTACCGTCCCTTGGTGCTCTTGACTGAGTGTCTCGGGCGGCCGGAACGTTTACTTTGAAGAAATTAGAGTGCTCAAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ruditapes philippinarum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:231750",
"confidence": 0.84
},
{
"method": "VSEARCH",
"scientificName": "Paphia textile",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:214508",
"accession": "JN996721.1.1831_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ruditapes philippinarum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:231750",
"accession": "JN807341.1.1833_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ruditapes philippinarum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:231750",
"accession": "JN807342.1.1833_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ruditapes philippinarum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:231750",
"accession": "AM774568.1.1781_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ruditapes philippinarum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:231750",
"accession": "EU660736.1.878_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
4.0
|
| id |
71fdcb8c-e158-4e1c-b19b-b15f06c2cd5b
|
| scientificName |
Ruditapes philippinarum
|
| AphiaID |
231750
|
| eventDate |
2022-05-25
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S47
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTGCAGGCTTGCGGTCCGTCTCGCGGCGGTCACTGCTCGTCCTGGCCTCCACGCCGGCGTACCGTCCCTTGGTGCTCTTGACTGAGTGTCTCGGGCGGCCGGAACGTTTACTTTGAAGAAATTAGAGTGCTCAAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ruditapes philippinarum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:231750",
"confidence": 0.84
},
{
"method": "VSEARCH",
"scientificName": "Paphia textile",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:214508",
"accession": "JN996721.1.1831_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ruditapes philippinarum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:231750",
"accession": "JN807341.1.1833_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ruditapes philippinarum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:231750",
"accession": "JN807342.1.1833_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ruditapes philippinarum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:231750",
"accession": "AM774568.1.1781_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ruditapes philippinarum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:231750",
"accession": "EU660736.1.878_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
| id |
ec07ea92-164c-45ca-a1e3-6530cd207911
|
| scientificName |
Ruditapes philippinarum
|
| AphiaID |
231750
|
| eventDate |
2022-05-25
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S48
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTGCAGGCTTGCGGTCCGTCTCGCGGCGGTCACTGCTCGTCCTGGCCTCCACGCCGGCGTACCGTCCCTTGGTGCTCTTGACTGAGTGTCTCGGGCGGCCGGAACGTTTACTTTGAAGAAATTAGAGTGCTCAAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ruditapes philippinarum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:231750",
"confidence": 0.84
},
{
"method": "VSEARCH",
"scientificName": "Paphia textile",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:214508",
"accession": "JN996721.1.1831_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ruditapes philippinarum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:231750",
"accession": "JN807341.1.1833_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ruditapes philippinarum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:231750",
"accession": "JN807342.1.1833_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ruditapes philippinarum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:231750",
"accession": "AM774568.1.1781_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ruditapes philippinarum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:231750",
"accession": "EU660736.1.878_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|