| Occurrences: |
view occurrences
| id |
722e0a92-f990-4881-85c8-460256f0c7e5
|
| scientificName |
Microcosmus
|
| eventDate |
2023-05-17
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-21
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTTACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103522",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_squamiger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:236666",
"accession": "FM244855.1.1786_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"accession": "KT387603.1.1766_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
9.0
|
| id |
78238634-a595-40d6-afee-abb8a61c6079
|
| scientificName |
Microcosmus exasperatus
|
| AphiaID |
103838
|
| eventDate |
2023-05-17
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-21
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"confidence": 0.96
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"accession": "KT387603.1.1766_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_squamiger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:236666",
"accession": "FM244855.1.1786_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
2163.0
|
|