| Occurrences: |
view occurrences
| id |
b6dedbd4-fc1b-40f1-89d7-f7b13b5a9b7a
|
| scientificName |
Elysia ornata
|
| AphiaID |
139682
|
| eventDate |
2022-10-03
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S168
|
| target_gene |
COI
|
| DNA_sequence |
TCTAAGGGGACCTATTGGTCATGGAGGTGCTTCCGTAGACTTGGCAATTTTTTCACTGCACTTAGCAGGGATGTCATCTATTCTAGGTGCGGTAAACTTTATTACTACGATTTTTAATATACGCTCTCCTGGCATAAGAATGGAACGATTAAGTCTATTCGTATGATCAGTTCTGGTAACTGCTTTCTTATTACTCTTATCACTCCCTGTATTAGCAGGAGCTATTACTATACTACTTACAGACCGTAATTTTAATACTAGTTTCTTTGATCCTGCTGGGGGAGGAGATCCTATCTTATATCAACATTTATTC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Elysia ornata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139682",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Elysia_ornata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139682",
"accession": "DQ471262",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Elysia_ornata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139682",
"accession": "DQ471263",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Elysia_ornata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139682",
"accession": "AB758962",
"identity": 0.997,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Elysia_ornata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139682",
"accession": "AB758963",
"identity": 0.997,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Elysia_ornata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139682",
"accession": "GQ996687",
"identity": 0.997,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
65.0
|
| id |
7644b73e-caa8-4e2b-bdd8-5d2085950278
|
| scientificName |
Elysia ornata
|
| AphiaID |
139682
|
| eventDate |
2022-10-03
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S164
|
| target_gene |
COI
|
| DNA_sequence |
TCTAAGGGGACCTATTGGTCATGGAGGTGCTTCCGTAGACTTGGCAATTTTTTCACTGCACTTAGCAGGGATGTCATCTATTCTAGGTGCGGTAAACTTTATTACTACGATTTTTAATATACGCTCTCCTGGCATAAGAATGGAACGATTAAGTCTATTCGTATGATCAGTTCTGGTAACTGCTTTCTTATTACTCTTATCACTCCCTGTATTAGCAGGAGCTATTACTATACTACTTACAGACCGTAATTTTAATACTAGTTTCTTTGATCCTGCTGGGGGAGGAGATCCTATCTTATATCAACATTTATTC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Elysia ornata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139682",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Elysia_ornata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139682",
"accession": "DQ471262",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Elysia_ornata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139682",
"accession": "DQ471263",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Elysia_ornata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139682",
"accession": "AB758962",
"identity": 0.997,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Elysia_ornata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139682",
"accession": "AB758963",
"identity": 0.997,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Elysia_ornata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139682",
"accession": "GQ996687",
"identity": 0.997,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
7.0
|
| id |
84c47bf2-4ab1-4aa3-8c0f-4f997eea56fa
|
| scientificName |
Elysia ornata
|
| AphiaID |
139682
|
| eventDate |
2022-10-03
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S167
|
| target_gene |
COI
|
| DNA_sequence |
TCTAAGGGGACCTATTGGTCATGGAGGTGCTTCCGTAGACTTGGCAATTTTTTCACTGCACTTAGCAGGGATGTCATCTATTCTAGGTGCGGTAAACTTTATTACTACGATTTTTAATATACGCTCTCCTGGCATAAGAATGGAACGATTAAGTCTATTCGTATGATCAGTTCTGGTAACTGCTTTCTTATTACTCTTATCACTCCCTGTATTAGCAGGAGCTATTACTATACTACTTACAGACCGTAATTTTAATACTAGTTTCTTTGATCCTGCTGGGGGAGGAGATCCTATCTTATATCAACATTTATTC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Elysia ornata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139682",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Elysia_ornata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139682",
"accession": "DQ471262",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Elysia_ornata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139682",
"accession": "DQ471263",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Elysia_ornata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139682",
"accession": "AB758962",
"identity": 0.997,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Elysia_ornata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139682",
"accession": "AB758963",
"identity": 0.997,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Elysia_ornata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139682",
"accession": "GQ996687",
"identity": 0.997,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
3.0
|
|