| Occurrences: |
view occurrences
| id |
77bf9733-72a5-45cf-9013-f049f65c74f4
|
| scientificName |
Amphibalanus amphitrite
|
| AphiaID |
421137
|
| eventDate |
2022-05-25
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S152
|
| target_gene |
COI
|
| DNA_sequence |
TTTATCAAGTAACATTGCTCATTCTGGTGCTTCAGTTGACTTATCAATTTTCTCTTTACATTTAGCGGGTGCTTCGTCAATTTTAGGTGCCATTAATTTTATGTCTACAGTTATTAACATACGAGCTGAAACACTGACATTTGATCGACTTCCATTATTTGTCTGAAGAGTATTTATTACTGTAATTCTTTTACTTTTATCACTTCCAGTACTAGCAGGAGCTATTACTATGTTGCTAACAGATCGAAATCTGAATACCTCATTTTTTGATCCAACAGGAGGTGGAGATCCAATCTTATACCAACATCTATTT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Amphibalanus amphitrite",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:421137",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Amphibalanus amphitrite",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:421137",
"accession": "JQ035516",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Amphibalanus amphitrite",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:421137",
"accession": "KM211366",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Amphibalanus amphitrite",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:421137",
"accession": "KM211368",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Amphibalanus amphitrite",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:421137",
"accession": "KM211371",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Amphibalanus amphitrite",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:421137",
"accession": "KM211373",
"identity": 1,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
3.0
|
| id |
c8ee9f5e-3c93-42ad-a47b-11ba5c687141
|
| scientificName |
Amphibalanus amphitrite
|
| AphiaID |
421137
|
| eventDate |
2022-05-25
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S138
|
| target_gene |
COI
|
| DNA_sequence |
TTTATCAAGTAACATTGCTCATTCTGGTGCTTCAGTTGACTTATCAATTTTCTCTTTACATTTAGCGGGTGCTTCGTCAATTTTAGGTGCCATTAATTTTATGTCTACAGTTATTAACATACGAGCTGAAACACTGACATTTGATCGACTTCCATTATTTGTCTGAAGAGTATTTATTACTGTAATTCTTTTACTTTTATCACTTCCAGTACTAGCAGGAGCTATTACTATGTTGCTAACAGACCGAAATCTGAATACCTCATTTTTTGATCCAACAGGAGGTGGAGATCCAATCTTATACCAACATCTATTT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Amphibalanus amphitrite",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:421137",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Amphibalanus amphitrite",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:421137",
"accession": "KM211419",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Amphibalanus amphitrite",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:421137",
"accession": "JQ035516",
"identity": 0.997,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Amphibalanus amphitrite",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:421137",
"accession": "OQ119806",
"identity": 0.997,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Amphibalanus amphitrite",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:421137",
"accession": "OQ119825",
"identity": 0.997,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Amphibalanus amphitrite",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:421137",
"accession": "OQ119840",
"identity": 0.997,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
1.0
|
|