| Occurrences: |
view occurrences
| id |
80ad037d-f594-415f-9599-f17c4902bcbf
|
| scientificName |
Pennaria disticha
|
| AphiaID |
117802
|
| eventDate |
2022-02-01
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S16
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCGGGATGGGCCAGTTGGTCCGCCGCAAGGTGTGTTACCGACTGGTCTGTTCTTCTTCGCAAAGACTGCTCATGCACTTTATTGTGTGTGTGTAGGATTTACGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pennaria disticha",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117802",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_disticha",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117802",
"accession": "GQ424342.1.1801_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_disticha",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117802",
"accession": "EU883545.1.1796_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_disticha",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117802",
"accession": "AY920762.1.1776_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_sp.",
"accession": "KF962290.1.1674_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_sp.",
"accession": "KF962291.1.1674_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
37.0
|
| id |
78bfea14-3044-4913-b934-90bd383cfcf5
|
| scientificName |
Pennaria disticha
|
| AphiaID |
117802
|
| eventDate |
2022-02-01
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S42
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCGGGATGGGCCAGTTGGTCCGCCGCAAGGTGTGTTACCGACTGGTCTGTTCTTCTTCGCAAAGACTGCTCATGCACTTTATTGTGTGTGTGTAGGATTTACGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pennaria disticha",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117802",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_disticha",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117802",
"accession": "GQ424342.1.1801_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_disticha",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117802",
"accession": "EU883545.1.1796_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_disticha",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117802",
"accession": "AY920762.1.1776_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_sp.",
"accession": "KF962290.1.1674_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_sp.",
"accession": "KF962291.1.1674_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
3.0
|
|