PacMAN decision support system

Potential detection of Chaetoceros peruvianus in Fiji

Description:

Potential detection of Chaetoceros peruvianus with confidence low on 2023-08-24 in material sample USP-24-01-31, marker 18S

Confidence:

low

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Chaetoceros peruvianus
Heterokontophyta > Bacillariophyceae > Chaetocerotanae incertae sedis > Chaetocerotaceae
WoRMS: 178185

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

6.0

Names:

Occurrences:

view occurrences

id	b7efb05f-8822-49b3-ad9e-a33d8b4aa5d6
scientificName	Chaetoceros rostratus
AphiaID	178201
eventDate	2023-08-24
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-31
target_gene	18S
DNA_sequence	TTTGTTGGTTTGCGTACCGAGGTAATGATTAATAGGGACAGTTGGGGGTATTTGTATTCAGTATTCAGTGGTGAAATACTTAGACCTACGGAAGACAAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTATGGGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "accession": "X85391.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "HQ869026.1.871_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "AJ535167.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "AY426893.1.820_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "HQ912650.1.1640_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	6.0

id	eb855f67-4b2b-46b2-90ae-8d8799b3f463
scientificName	Chaetoceros rostratus
AphiaID	178201
eventDate	2023-08-24
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-34
target_gene	18S
DNA_sequence	TTTGTTGGTTTGCGTACCGAGGTAATGATTAATAGGGACAGTTGGGGGTATTTGTATTCAGTATTCAGTGGTGAAATACTTAGACCTACGGAAGACAAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTATGGGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "accession": "X85391.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "HQ869026.1.871_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "AJ535167.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "AY426893.1.820_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "HQ912650.1.1640_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	5.0

id	79819a2e-a5c8-499b-934f-55c3cc46092f
scientificName	Chaetoceros rostratus
AphiaID	178201
eventDate	2023-08-24
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-30
target_gene	18S
DNA_sequence	TTTGTTGGTTTGCGTACCGAGGTAATGATTAATAGGGACAGTTGGGGGTATTTGTATTCAGTATTCAGTGGTGAAATACTTAGACCTACGGAAGACAAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTATGGGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "accession": "X85391.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "HQ869026.1.871_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "AJ535167.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "AY426893.1.820_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "HQ912650.1.1640_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	3.0

id	e9490e91-683a-4f36-8db3-8ec6495e5f20
scientificName	Chaetoceros rostratus
AphiaID	178201
eventDate	2023-08-24
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-29
target_gene	18S
DNA_sequence	TTTGTTGGTTTGCGTACCGAGGTAATGATTAATAGGGACAGTTGGGGGTATTTGTATTCAGTATTCAGTGGTGAAATACTTAGACCTACGGAAGACAAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTATGGGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "accession": "X85391.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "HQ869026.1.871_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "AJ535167.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "AY426893.1.820_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "HQ912650.1.1640_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	2.0

id	8041e8e3-a26d-488b-9b74-4918b36785b6
scientificName	Chaetoceros rostratus
AphiaID	178201
eventDate	2023-08-24
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-33
target_gene	18S
DNA_sequence	TTTGTTGGTTTGCGTACCGAGGTAATGATTAATAGGGACAGTTGGGGGTATTTGTATTCAGTATTCAGTGGTGAAATACTTAGACCTACGGAAGACAAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTATGGGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "accession": "X85391.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "HQ869026.1.871_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "AJ535167.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "AY426893.1.820_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "HQ912650.1.1640_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	1.0

id	ee556a6d-90ca-4716-9c80-ee8b8235ce84
scientificName	Chaetoceros rostratus
AphiaID	178201
eventDate	2023-08-24
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-32
target_gene	18S
DNA_sequence	TTTGTTGGTTTGCGTACCGAGGTAATGATTAATAGGGACAGTTGGGGGTATTTGTATTCAGTATTCAGTGGTGAAATACTTAGACCTACGGAAGACAAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTATGGGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "accession": "X85391.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "HQ869026.1.871_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "AJ535167.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "AY426893.1.820_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "HQ912650.1.1640_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	1.0

Chaetoceros peruvianus in Fiji

Status

Chaetoceros peruvianus does not have an offial status in Fiji.

Notes

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No notes found.