PacMAN decision support system

Potential detection of Ascidia sydneiensis in Fiji

Description:

Potential detection of Ascidia sydneiensis with confidence low on 2023-05-31 in material sample USP-24-01-26, marker 18S

Confidence:

low

Risk:

medium view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Ascidia sydneiensis
Chordata > Ascidiacea > Phlebobranchia > Ascidiidae
WoRMS: 215940

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

Reads:

8.0

Names:

Occurrences:

view occurrences

id	933efeab-cb7d-4382-a789-0af1264236e3
scientificName	Ascidia sydneiensis var. samea
AphiaID	215940
eventDate	2023-05-31
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-26
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTTCTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ascidia sydneiensis samea", "confidence": 0.88 }, { "method": "VSEARCH", "scientificName": "Ascidia_sydneiensis_samea", "accession": "AF165819.1.1065_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ascidiella_sp.", "accession": "FM244843.1.1766_U", "identity": 0.976, "query_cover": 0.9952 } ] }
organismQuantity	8.0

id	99f96923-11ea-4f35-8c9c-6fc0af08b1d1
scientificName	Ascidia sydneiensis var. samea
AphiaID	215940
eventDate	2023-05-31
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-28
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTTCTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ascidia sydneiensis samea", "confidence": 0.88 }, { "method": "VSEARCH", "scientificName": "Ascidia_sydneiensis_samea", "accession": "AF165819.1.1065_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ascidiella_sp.", "accession": "FM244843.1.1766_U", "identity": 0.976, "query_cover": 0.9952 } ] }
organismQuantity	7.0

id	ab9cf7c6-e849-4fc3-96bf-ab9cf2932e85
scientificName	Ascidia sydneiensis var. samea
AphiaID	215940
eventDate	2023-05-31
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-27
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTACTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ascidia sydneiensis samea", "confidence": 0.91 }, { "method": "VSEARCH", "scientificName": "Ascidia_sydneiensis_samea", "accession": "AF165819.1.1065_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ascidiella_sp.", "accession": "FM244843.1.1766_U", "identity": 0.971, "query_cover": 0.9952 } ] }
organismQuantity	6.0

id	bfeb9db3-5546-4120-b459-e0718a445b6b
scientificName	Ascidia sydneiensis var. samea
AphiaID	215940
eventDate	2023-05-31
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-27
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTTCTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ascidia sydneiensis samea", "confidence": 0.88 }, { "method": "VSEARCH", "scientificName": "Ascidia_sydneiensis_samea", "accession": "AF165819.1.1065_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ascidiella_sp.", "accession": "FM244843.1.1766_U", "identity": 0.976, "query_cover": 0.9952 } ] }
organismQuantity	6.0

id	7c327181-acf7-4049-84ef-f643d3438855
scientificName	Ascidia sydneiensis var. samea
AphiaID	215940
eventDate	2023-05-31
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-28
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTTCTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ascidia sydneiensis samea", "confidence": 0.9 }, { "method": "VSEARCH", "scientificName": "Ascidia_sydneiensis_samea", "accession": "AF165819.1.1065_U", "identity": 0.986, "query_cover": 0.9952 } ] }
organismQuantity	1.0

id	816a9ab4-a790-40c5-a7cc-98f26cc07396
scientificName	Ascidia sydneiensis var. samea
AphiaID	215940
eventDate	2023-05-31
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-28
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTACTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ascidia sydneiensis samea", "confidence": 0.91 }, { "method": "VSEARCH", "scientificName": "Ascidia_sydneiensis_samea", "accession": "AF165819.1.1065_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ascidiella_sp.", "accession": "FM244843.1.1766_U", "identity": 0.971, "query_cover": 0.9952 } ] }
organismQuantity	1.0

id	d7366b42-39d8-4716-90a3-2dc198361e26
scientificName	Ascidia sydneiensis var. samea
AphiaID	215940
eventDate	2023-05-31
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-26
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTTCTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ascidia sydneiensis samea", "confidence": 0.9 }, { "method": "VSEARCH", "scientificName": "Ascidia_sydneiensis_samea", "accession": "AF165819.1.1065_U", "identity": 0.986, "query_cover": 0.9952 } ] }
organismQuantity	1.0

Ascidia sydneiensis does not have an offial status in Fiji.

No notes found.