PacMAN decision support system

Potential detection of Salmo salar in Fiji

Description:

Potential detection of Salmo salar with confidence low on 2022-06-20 in material sample S125, marker COI

Confidence:

low

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Salmo salar
Chordata > Teleostei > Salmoniformes > Salmonidae
WoRMS: 127186 GISD: 376 CABI: 65307

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

323.0

Names:

3

Occurrences:

view occurrences

id	efa48812-f306-4bb0-b167-373247e223c9
scientificName	Thunnus obesus
AphiaID	127028
eventDate	2022-06-20
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S125
target_gene	COI
DNA_sequence	CCTTGCCGGCAACCTGGCCCACGCAGGGGCATCAGTTGACCTAACTATTTTCTCACTGCACTTAGCAGGGGTTTCCTCAATTCTTGGGGCAATTAACTTCATCACAACAATTATCAATATGAAACCTGCAGCTATTTCTCAGTATCAAACACCACTGTTTGTATGAGCTGTACTAATTACAGCTGTTCTTCTCCTACTTTCCCTTCCAGTCCTTGCCGCTGGTATTACAATGCTCCTTACAGACCGAAACCTAAATACAACCTTCTTCGACCCTGCAGGAGGGGGAGACCCAATCCTTTACCAACACCTATTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": null }, "annotations": [ { "method": "RDP classifier", "scientificName": "Thunnus obesus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127028", "confidence": 0.86 }, { "method": "VSEARCH", "scientificName": "Salmo salar", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127186", "accession": "MW826614", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Salmo salar", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127186", "accession": "MW826616", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Thunnus albacares", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127027", "accession": "KM055417", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Thunnus obesus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127028", "accession": "DQ107629", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Thunnus obesus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127028", "accession": "DQ107642", "identity": 1, "query_cover": 0.9968 } ] }
organismQuantity	323.0

id	b7d4684f-a360-4a94-a595-ca65eeda1f0d
scientificName	Thunnus obesus
AphiaID	127028
eventDate	2022-06-20
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S131
target_gene	COI
DNA_sequence	CCTTGCCGGCAACCTGGCCCACGCAGGGGCATCAGTTGACCTAACTATTTTCTCACTGCACTTAGCAGGGGTTTCCTCAATTCTTGGGGCAATTAACTTCATCACAACAATTATCAATATGAAACCTGCAGCTATTTCTCAGTATCAAACACCACTGTTTGTATGAGCTGTACTAATTACAGCTGTTCTTCTCCTACTTTCCCTTCCAGTCCTTGCCGCTGGTATTACAATGCTCCTTACAGACCGAAACCTAAATACAACCTTCTTCGACCCTGCAGGAGGGGGAGACCCAATCCTTTACCAACACCTATTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": null }, "annotations": [ { "method": "RDP classifier", "scientificName": "Thunnus obesus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127028", "confidence": 0.86 }, { "method": "VSEARCH", "scientificName": "Salmo salar", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127186", "accession": "MW826614", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Salmo salar", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127186", "accession": "MW826616", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Thunnus albacares", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127027", "accession": "KM055417", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Thunnus obesus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127028", "accession": "DQ107629", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Thunnus obesus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127028", "accession": "DQ107642", "identity": 1, "query_cover": 0.9968 } ] }
organismQuantity	257.0

id	cecf4d6b-a5aa-4b5c-a639-021253614c72
scientificName	Thunnus obesus
AphiaID	127028
eventDate	2022-06-20
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S130
target_gene	COI
DNA_sequence	CCTTGCCGGCAACCTGGCCCACGCAGGGGCATCAGTTGACCTAACTATTTTCTCACTGCACTTAGCAGGGGTTTCCTCAATTCTTGGGGCAATTAACTTCATCACAACAATTATCAATATGAAACCTGCAGCTATTTCTCAGTATCAAACACCACTGTTTGTATGAGCTGTACTAATTACAGCTGTTCTTCTCCTACTTTCCCTTCCAGTCCTTGCCGCTGGTATTACAATGCTCCTTACAGACCGAAACCTAAATACAACCTTCTTCGACCCTGCAGGAGGGGGAGACCCAATCCTTTACCAACACCTATTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": null }, "annotations": [ { "method": "RDP classifier", "scientificName": "Thunnus obesus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127028", "confidence": 0.86 }, { "method": "VSEARCH", "scientificName": "Salmo salar", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127186", "accession": "MW826614", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Salmo salar", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127186", "accession": "MW826616", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Thunnus albacares", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127027", "accession": "KM055417", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Thunnus obesus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127028", "accession": "DQ107629", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Thunnus obesus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127028", "accession": "DQ107642", "identity": 1, "query_cover": 0.9968 } ] }
organismQuantity	205.0

id	d49b4c2a-c460-4ea0-9184-3f96c9a991b1
scientificName	Thunnus obesus
AphiaID	127028
eventDate	2022-06-20
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S131
target_gene	COI
DNA_sequence	CCTTGCCGGCAACCTGGCCCACGCAGGGGCATCAGTTGACCTGACTATTTTCTCACTGCACTTAGCAGGGGTTTCCTCAATTCTTGGGGCAATTAACTTCATCACAACAATTATCAATATGAAACCTGCAGCTATTTCTCAGTATCAAACACCACTGTTTGTATGAGCTGTACTAATTACAGCTGTTCTTCTCCTACTTTCCCTTCCAGTCCTTGCCGCTGGTATTACAATGCTCCTTACAGACCGAAACCTAAATACAACCTTCTTCGACCCTGCAGGAGGGGGAGACCCAATCCTTTACCAACACCTATTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": null }, "annotations": [ { "method": "RDP classifier", "scientificName": "Thunnus obesus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127028", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Thunnus obesus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127028", "accession": "DQ835869", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Thunnus obesus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127028", "accession": "OL014470", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Thunnus atlanticus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:159343", "accession": "OK030802", "identity": 0.997, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Salmo salar", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127186", "accession": "MW826614", "identity": 0.997, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Salmo salar", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127186", "accession": "MW826616", "identity": 0.997, "query_cover": 0.9968 } ] }
organismQuantity	24.0

id	e4f71db6-593b-42d1-a4c6-dceaefe7eb7b
scientificName	Thunnus obesus
AphiaID	127028
eventDate	2022-06-20
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S130
target_gene	COI
DNA_sequence	CCTTGCCGGCAACCTGGCCCACGCAGGGGCATCAGTTGACCTGACTATTTTCTCACTGCACTTAGCAGGGGTTTCCTCAATTCTTGGGGCAATTAACTTCATCACAACAATTATCAATATGAAACCTGCAGCTATTTCTCAGTATCAAACACCACTGTTTGTATGAGCTGTACTAATTACAGCTGTTCTTCTCCTACTTTCCCTTCCAGTCCTTGCCGCTGGTATTACAATGCTCCTTACAGACCGAAACCTAAATACAACCTTCTTCGACCCTGCAGGAGGGGGAGACCCAATCCTTTACCAACACCTATTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": null }, "annotations": [ { "method": "RDP classifier", "scientificName": "Thunnus obesus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127028", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Thunnus obesus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127028", "accession": "DQ835869", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Thunnus obesus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127028", "accession": "OL014470", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Thunnus atlanticus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:159343", "accession": "OK030802", "identity": 0.997, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Salmo salar", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127186", "accession": "MW826614", "identity": 0.997, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Salmo salar", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127186", "accession": "MW826616", "identity": 0.997, "query_cover": 0.9968 } ] }
organismQuantity	17.0

id	80db6163-259d-437a-b93c-19aeb5bf353b
scientificName	Thunnus obesus
AphiaID	127028
eventDate	2022-06-20
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S125
target_gene	COI
DNA_sequence	CCTTGCCGGCAACCTGGCCCACGCAGGGGCATCAGTTGACCTGACTATTTTCTCACTGCACTTAGCAGGGGTTTCCTCAATTCTTGGGGCAATTAACTTCATCACAACAATTATCAATATGAAACCTGCAGCTATTTCTCAGTATCAAACACCACTGTTTGTATGAGCTGTACTAATTACAGCTGTTCTTCTCCTACTTTCCCTTCCAGTCCTTGCCGCTGGTATTACAATGCTCCTTACAGACCGAAACCTAAATACAACCTTCTTCGACCCTGCAGGAGGGGGAGACCCAATCCTTTACCAACACCTATTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": null }, "annotations": [ { "method": "RDP classifier", "scientificName": "Thunnus obesus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127028", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Thunnus obesus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127028", "accession": "DQ835869", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Thunnus obesus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127028", "accession": "OL014470", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Thunnus atlanticus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:159343", "accession": "OK030802", "identity": 0.997, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Salmo salar", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127186", "accession": "MW826614", "identity": 0.997, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Salmo salar", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127186", "accession": "MW826616", "identity": 0.997, "query_cover": 0.9968 } ] }
organismQuantity	14.0

Salmo salar in Fiji

Status

Salmo salar does not have an offial status in Fiji.

Notes

No notes found.