| Occurrences: |
view occurrences
| id |
cec05069-c093-435d-a82f-13626826d157
|
| scientificName |
Chama gryphoides
|
| AphiaID |
139119
|
| eventDate |
2022-10-03
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S81
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCTAACAGCGTATATAAAGACTGTTGCGGCTAAAACGCTCGTGGTTGGATTTCAGGCCGGGGGCCCACCGCGTCGCGGGCTTCTCGAAAGAGGAGCGCTTAAATAGGCGACGAGGCAGAGTTCCCTTGACTGGGGATTCGCGGGCCGACCGTGTTCCTGACTGGCACTCTCGTCCGAGTGGGGGCTCTTGAC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chama gryphoides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139119",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chama gryphoides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139119",
"accession": "AF120545.1.1505_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Chama gryphoides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139119",
"accession": "KX713276.1.1965_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Chama macerophylla",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397039",
"accession": "KC429369.1.1967_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
5.0
|
| id |
8355d3ff-1c59-43fb-bcb4-54ea35179340
|
| scientificName |
Chama gryphoides
|
| AphiaID |
139119
|
| eventDate |
2022-10-03
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S77
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCTAACAGCGTATATAAAGACTGTTGCGGCTAAAACGCTCGTGGTTGGATTTCAGGCCGGGGGCCCACCGCGTCGCGGGCTTCTCGAAAGAGGAGCGCTTAAATAGGCGACGAGGCAGAGTTCCCTTGACTGGGGATTCGCGGGCCGACCGTGTTCCTGACTGGCACTCTCGTCCGAGTGGGGGCTCTTGAC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chama gryphoides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139119",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chama gryphoides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139119",
"accession": "AF120545.1.1505_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Chama gryphoides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139119",
"accession": "KX713276.1.1965_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Chama macerophylla",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397039",
"accession": "KC429369.1.1967_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
4.0
|
|