| Occurrences: |
view occurrences
| id |
891a194c-0eef-4f8f-a0c1-b1387885a7a9
|
| scientificName |
Steromphala cineraria
|
| AphiaID |
1039839
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-44
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATCTCAGGGTCGTTCGCGTCGGTCCCTTGCTTCAATGGCTCGGGTACTGCGCGGTGTCGTCCCCCTTGCCAGACCTCTCAAAAAGGTTGCTCTTGACTGAGTGGCCTGCTCGAGTGGCTGGAGAGTTTACTTTGAAAAAATTAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Gibbula cineraria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141782",
"confidence": 0.98
},
{
"method": "VSEARCH",
"scientificName": "Calliostoma sakashitai",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467253",
"accession": "AB365306.1.1813_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Chaetoderma_nitidulum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139106",
"accession": "AY340425.1.1003_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Umbonium costatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:556961",
"accession": "AM048646.1.981_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Monilea lentiginosa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:718867",
"accession": "EU530085.1.979_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Eurytrochus cognatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1477122",
"accession": "EU530080.1.981_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
98.0
|
| id |
e4fa481a-6c14-4cdf-a4f5-6a803cd5584e
|
| scientificName |
Steromphala cineraria
|
| AphiaID |
1039839
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-45
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATCTCAGGGTCGTTCGCGTCGGTCCCTTGCTTCAATGGCTCGGGTACTGCGCGGTGTCGTCCCCCTTGCCAGACCTCTCAAAAAGGTTGCTCTTGACTGAGTGGCCTGCTCGAGTGGCTGGAGAGTTTACTTTGAAAAAATTAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Gibbula cineraria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141782",
"confidence": 0.98
},
{
"method": "VSEARCH",
"scientificName": "Calliostoma sakashitai",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467253",
"accession": "AB365306.1.1813_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Chaetoderma_nitidulum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139106",
"accession": "AY340425.1.1003_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Umbonium costatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:556961",
"accession": "AM048646.1.981_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Monilea lentiginosa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:718867",
"accession": "EU530085.1.979_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Eurytrochus cognatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1477122",
"accession": "EU530080.1.981_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
16.0
|
| id |
bac4bad1-876a-428a-a864-c2f2ab12d77f
|
| scientificName |
Steromphala cineraria
|
| AphiaID |
1039839
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-34
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATCTCAGGGTCGTTCGCGTCGGTCCCTTGCTTCAATGGCTCGGGTACTGCGCGGTGTCGTCCCCCTTGCCAGACCTCTCAAAAAGGTTGCTCTTGACTGAGTGGCCTGCTCGAGTGGCTGGAGAGTTTACTTTGAAAAAATTAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Gibbula cineraria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141782",
"confidence": 0.98
},
{
"method": "VSEARCH",
"scientificName": "Calliostoma sakashitai",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467253",
"accession": "AB365306.1.1813_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Chaetoderma_nitidulum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139106",
"accession": "AY340425.1.1003_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Umbonium costatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:556961",
"accession": "AM048646.1.981_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Monilea lentiginosa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:718867",
"accession": "EU530085.1.979_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Eurytrochus cognatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1477122",
"accession": "EU530080.1.981_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
2.0
|
| id |
d3d62165-72d8-44ca-a5c3-026f17dca647
|
| scientificName |
Steromphala cineraria
|
| AphiaID |
1039839
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-33
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATCTCAGGGTCGTTCGCGTCGGTCCCTTGCTTCAATGGCTCGGGTACTGCGCGGTGTCGTCCCCCTTGCCAGACCTCTCAAAAAGGTTGCTCTTGACTGAGTGGCCTGCTCGAGTGGCTGGAGAGTTTACTTTGAAAAAATTAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Gibbula cineraria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141782",
"confidence": 0.98
},
{
"method": "VSEARCH",
"scientificName": "Calliostoma sakashitai",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467253",
"accession": "AB365306.1.1813_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Chaetoderma_nitidulum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139106",
"accession": "AY340425.1.1003_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Umbonium costatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:556961",
"accession": "AM048646.1.981_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Monilea lentiginosa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:718867",
"accession": "EU530085.1.979_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Eurytrochus cognatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1477122",
"accession": "EU530080.1.981_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|