| Occurrences: |
view occurrences
| id |
b41c8f77-3134-4fc1-8e81-bd37de7d4e27
|
| scientificName |
Ciona savignyi
|
| AphiaID |
250292
|
| eventDate |
2023-05-31
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-26
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ciona savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"confidence": 0.96
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01030526.2.1210_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01059881.1228.2676_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_herdmanni",
"accession": "FM244847.1.1607_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01041541.1.1348_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01045610.1.1202_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
13.0
|
| id |
ca268a23-01cd-4acc-a6fc-b24aa3470343
|
| scientificName |
Ciona savignyi
|
| AphiaID |
250292
|
| eventDate |
2023-05-31
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-27
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ciona savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"confidence": 0.96
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01030526.2.1210_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01059881.1228.2676_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_herdmanni",
"accession": "FM244847.1.1607_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01041541.1.1348_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01045610.1.1202_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
2.0
|
| id |
8ac13def-c56f-464d-a84c-3f3b0b044b2c
|
| scientificName |
Ciona savignyi
|
| AphiaID |
250292
|
| eventDate |
2023-05-31
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-28
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ciona savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"confidence": 0.96
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01030526.2.1210_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01059881.1228.2676_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_herdmanni",
"accession": "FM244847.1.1607_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01041541.1.1348_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01045610.1.1202_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
|