| Occurrences: |
view occurrences
| id |
b65c53d7-59ca-481e-93e5-39457d60dd2e
|
| scientificName |
Amathia imbricata
|
| AphiaID |
851593
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-65
|
| target_gene |
18S
|
| DNA_sequence |
GCTGGTTTTAGAGTCGGCGAGCCAATGATTAATAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 0.98
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Amathia_verticillata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:851581",
"accession": "KM373518.1.1827_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_citrina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111664",
"accession": "FJ152020.1.1770_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Walkeria_uva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111676",
"accession": "FJ152044.1.1859_U",
"identity": 0.981,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
242.0
|
| id |
a77f0eba-6173-4f68-9a7a-1bb33550a501
|
| scientificName |
Amathia imbricata
|
| AphiaID |
851593
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-33
|
| target_gene |
18S
|
| DNA_sequence |
GCTGGTTTTAGAGTCGGCGAGCCAATGATTAATAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 0.98
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Amathia_verticillata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:851581",
"accession": "KM373518.1.1827_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_citrina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111664",
"accession": "FJ152020.1.1770_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Walkeria_uva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111676",
"accession": "FJ152044.1.1859_U",
"identity": 0.981,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
2.0
|
| id |
c08cd1fa-5b48-42c5-8f0e-5fe702d65a93
|
| scientificName |
Amathia imbricata
|
| AphiaID |
851593
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-65
|
| target_gene |
18S
|
| DNA_sequence |
GCTGGTTTTAGAGTCGGCGAGCCAATGATTAAGAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Amathia_verticillata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:851581",
"accession": "KM373518.1.1827_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_citrina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111664",
"accession": "FJ152020.1.1770_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Walkeria_uva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111676",
"accession": "FJ152044.1.1859_U",
"identity": 0.988,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
51.0
|
| id |
9045c263-18aa-473d-a112-7ded46a8399e
|
| scientificName |
Amathia imbricata
|
| AphiaID |
851593
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-29
|
| target_gene |
18S
|
| DNA_sequence |
GCTGGTTTTAGAGTCGGCGAGCCAATGATTAAGAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Amathia_verticillata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:851581",
"accession": "KM373518.1.1827_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_citrina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111664",
"accession": "FJ152020.1.1770_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Walkeria_uva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111676",
"accession": "FJ152044.1.1859_U",
"identity": 0.988,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
|