| Occurrences: |
view occurrences
| id |
9392f61f-d269-417c-aa24-1a859a554f84
|
| scientificName |
Metridium senile
|
| AphiaID |
100982
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-64
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCGGGACGGGCCGGCCGGTCCGCCGCAAGGCGTGTTACTGACCGGGCTGTTCTTCTTCGCAAAGACTGCATGTGCTCTTAACTGAGTGTGTGTAGGACTTGTGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Metridium senile",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:100982",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Sagartiogeton_undatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:101002",
"accession": "FJ489435.1.1754_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Sagartia_elegans",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:100991",
"accession": "JF832989.1.1817_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Metridium_sp.",
"accession": "AF052889.1.1800_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Metridium_senile",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:100982",
"accession": "JF832988.1.1792_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Sagartia_ornata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:100993",
"accession": "JF832985.1.1794_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
3.0
|
| id |
dbcf8f18-f9d1-44f5-8f0a-0aee2095cc18
|
| scientificName |
Metridium senile
|
| AphiaID |
100982
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-31
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCGGGACGGGCCGGCCGGTCCGCCGCAAGGCGTGTTACTGACCGGGCTGTTCTTCTTCGCAAAGACTGCATGTGCTCTTAACTGAGTGTGTGTAGGACTTGTGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Metridium senile",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:100982",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Sagartiogeton_undatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:101002",
"accession": "FJ489435.1.1754_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Sagartia_elegans",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:100991",
"accession": "JF832989.1.1817_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Metridium_sp.",
"accession": "AF052889.1.1800_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Metridium_senile",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:100982",
"accession": "JF832988.1.1792_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Sagartia_ornata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:100993",
"accession": "JF832985.1.1794_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
3.0
|
|